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Clustered Mutations in Yeast and in Human Cancers Can Arise from Damaged Long Single-Strand DNA Regions

Molecular cell, 2012-05, Vol.46 (4), p.424-435

2012

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APOBEC3A and APOBEC3B Preferentially Deaminate the Lagging Strand Template during DNA Replication

Cell reports (Cambridge), 2016-02, Vol.14 (6), p.1273-1282

2016

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An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers

Nature genetics, 2015-09, Vol.47 (9), p.1067-1072

2015

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Break-Induced Replication Is a Source of Mutation Clusters Underlying Kataegis

Cell reports (Cambridge), 2014-06, Vol.7 (5), p.1640-1648

2014

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Long transposon-rich centromeres in an oomycete reveal divergence of centromere features in Stramenopila-Alveolata-Rhizaria lineages

PLoS genetics, 2020-03, Vol.16 (3), p.e1008646-e1008646

2020

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Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation

Nature structural & molecular biology, 2015-03, Vol.22 (3), p.185-191

2015

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Genetic heterogeneity of diffuse large B-cell lymphoma

Proceedings of the National Academy of Sciences - PNAS, 2013-01, Vol.110 (4), p.1398-1403

2013

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Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation

PLoS biology, 2019-09, Vol.17 (9), p.e3000464

2019

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Unisexual reproduction drives meiotic recombination and phenotypic and karyotypic plasticity in Cryptococcus neoformans

PLoS genetics, 2014-12, Vol.10 (12), p.e1004849-e1004849

2014

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Cryptococcus gattii VGIII isolates causing infections in HIV/AIDS patients in Southern California: identification of the local environmental source as arboreal

PLoS pathogens, 2014-08, Vol.10 (8), p.e1004285

2014

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Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition

Genome research, 2014-11, Vol.24 (11), p.1751-1764

2014

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Double-Strand Breaks Associated with Repetitive DNA Can Reshape the Genome

Proceedings of the National Academy of Sciences - PNAS, 2008-08, Vol.105 (33), p.11845-11850

2008

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The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts

PLoS genetics, 2016-10, Vol.12 (10), p.e1006385

2016

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Adaptation and selection shape clonal evolution of tumors during residual disease and recurrence

Nature communications, 2020-10, Vol.11 (1), p.5017-5017, Article 5017

2020

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Essential role for polymerase specialization in cellular nonhomologous end joining

Proceedings of the National Academy of Sciences - PNAS, 2015-08, Vol.112 (33), p.E4537-E4545

2015

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MAP3K4/CBP-Regulated H2B Acetylation Controls Epithelial-Mesenchymal Transition in Trophoblast Stem Cells

Cell stem cell, 2011-05, Vol.8 (5), p.525-537

2011

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Contributions of replicative and translesion DNA polymerases to mutagenic bypass of canonical and atypical UV photoproducts

Nature communications, 2023-05, Vol.14 (1), p.2576-2576, Article 2576

2023

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RIG-I Detects Kaposi's Sarcoma-Associated Herpesvirus Transcripts in a RNA Polymerase III-Independent Manner

mBio, 2018-07, Vol.9 (4)

2018

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Pre-capture multiplexing provides additional power to detect copy number variation in exome sequencing

BMC bioinformatics, 2021-07, Vol.22 (1), p.1-374, Article 374

2021

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Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in Melanoma

Cell reports (Cambridge), 2020-11, Vol.33 (7), p.108401-108401, Article 108401

2020

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Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production

Genome research, 2009-12, Vol.19 (12), p.2258-2270

2009

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Correction: Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation

PLoS biology, 2020-03, Vol.18 (3), p.e3000695-e3000695

2020

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Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes

Nucleic acids research, 2011-11, Vol.39 (20), p.8803-8819

2011

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Cavitation Enhancing Nanodroplets Mediate Efficient DNA Fragmentation in a Bench Top Ultrasonic Water Bath

PloS one, 2015-07, Vol.10 (7), p.e0133014-e0133014

2015

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The Pattern of Gene Amplification Is Determined by the Chromosomal Location of Hairpin-Capped Breaks

Cell, 2006-06, Vol.125 (7), p.1283-1296

2006

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Clustered Mutations in Yeast and in Human Cancers Can Arise from Damaged Long Single-Strand DNA Regions

APOBEC3A and APOBEC3B Preferentially Deaminate the Lagging Strand Template during DNA Replication

An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers

Break-Induced Replication Is a Source of Mutation Clusters Underlying Kataegis

Long transposon-rich centromeres in an oomycete reveal divergence of centromere features in Stramenopila-Alveolata-Rhizaria lineages

Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation

Genetic heterogeneity of diffuse large B-cell lymphoma

Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation

Unisexual reproduction drives meiotic recombination and phenotypic and karyotypic plasticity in Cryptococcus neoformans

Cryptococcus gattii VGIII isolates causing infections in HIV/AIDS patients in Southern California: identification of the local environmental source as arboreal

Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition

Double-Strand Breaks Associated with Repetitive DNA Can Reshape the Genome

The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts

Adaptation and selection shape clonal evolution of tumors during residual disease and recurrence

Essential role for polymerase specialization in cellular nonhomologous end joining

MAP3K4/CBP-Regulated H2B Acetylation Controls Epithelial-Mesenchymal Transition in Trophoblast Stem Cells

Contributions of replicative and translesion DNA polymerases to mutagenic bypass of canonical and atypical UV photoproducts

RIG-I Detects Kaposi's Sarcoma-Associated Herpesvirus Transcripts in a RNA Polymerase III-Independent Manner

Pre-capture multiplexing provides additional power to detect copy number variation in exome sequencing

Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in Melanoma

Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production

Correction: Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation

Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes

Cavitation Enhancing Nanodroplets Mediate Efficient DNA Fragmentation in a Bench Top Ultrasonic Water Bath

The Pattern of Gene Amplification Is Determined by the Chromosomal Location of Hairpin-Capped Breaks

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