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RESCRIPt: Reproducible sequence taxonomy reference database management

PLoS computational biology, 2021-11, Vol.17 (11), p.e1009581

2021

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Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

Molecular ecology, 2014-07, Vol.23 (13), p.3356-3370

2014

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Nature biotechnology, 2019-08, Vol.37 (8), p.852

2019

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Seasonal Shifts in Diet and Gut Microbiota of the American Bison (Bison bison)

PloS one, 2015-11, Vol.10 (11), p.e0142409-e0142409

2015

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Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota

PloS one, 2021-08, Vol.16 (8), p.e0237556-e0237556

2021

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Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis

Applied and environmental microbiology, 2016-09, Vol.82 (18), p.5698-5708

2016

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Physiological and cognitive changes after treatments of cyclophosphamide, methotrexate, and fluorouracil: implications of the gut microbiome and depressive-like behavior

Frontiers in neuroscience, 2023-10, Vol.17, p.1212791-1212791

2023

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Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes

The ISME Journal, 2015-12, Vol.9 (12), p.2642-2656

2015

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Global distribution of Polaromonas phylotypes--evidence for a highly successful dispersal capacity

PloS one, 2011-08, Vol.6 (8), p.e23742-e23742

2011

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Mixed ancestry from wild and domestic lineages contributes to the rapid expansion of invasive feral swine

Molecular ecology, 2020-03, Vol.29 (6), p.1103-1119

2020

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Short-Term Metformin Treatment Enriches Bacteroides dorei in an Obese Liver Steatosis Zucker Rat Model

Frontiers in microbiology, 2022-03, Vol.13, p.834776-834776

2022

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Gut Microbes Are Associated with the Vascular Beneficial Effects of Dietary Strawberry on Metabolic Syndrome‐Induced Vascular Inflammation

Molecular nutrition & food research, 2022-11, Vol.66 (22), p.e2200112-n/a

2022

Volltextzugriff (PDF)

Microbial community composition and diversity in Caspian Sea sediments

FEMS microbiology ecology, 2015-01, Vol.91 (1), p.1-11

2015

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Characterizing microbial communities through space and time

Current opinion in biotechnology, 2012-06, Vol.23 (3), p.431-436

2012

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Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa)

Ecology and evolution, 2018-01, Vol.8 (1), p.185-196

2018

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Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

Communications biology, 2021-01, Vol.4 (1), p.117-117, Article 117

2021

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Dispersal, niche breadth and population extinction: colonization ratios predict range size in North American dragonflies

The Journal of animal ecology, 2014-07, Vol.83 (4), p.858-865

2014

Volltextzugriff (PDF)

Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods

Computational and structural biotechnology journal, 2020-01, Vol.18, p.4048-4062

2020

Volltextzugriff (PDF)

Multi-omics data integration considerations and study design for biological systems and disease

Molecular omics, 2021-04, Vol.17 (2), p.17-185

2021

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Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments

PloS one, 2014-07, Vol.9 (7), p.e102826-e102826

2014

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Gastrointestinal Tract Dysbiosis Enhances Distal Tumor Progression through Suppression of Leukocyte Trafficking

Cancer research (Chicago, Ill.), 2019-12, Vol.79 (23), p.5999-6009

2019

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Interspecific Plant Interactions Reflected in Soil Bacterial Community Structure and Nitrogen Cycling in Primary Succession

Frontiers in microbiology, 2018-02, Vol.9, p.128-128

2018

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Bacterial and Fungal Adaptations in Cecum and Distal Colon of Piglets Fed With Dairy-Based Milk Formula in Comparison With Human Milk

Frontiers in microbiology, 2022-03, Vol.13, p.801854-801854

2022

Volltextzugriff (PDF)

Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally

Proceedings of the National Academy of Sciences - PNAS, 2011-03, Vol.108 (11), p.4406-4410

2011

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RESCRIPt: Reproducible sequence taxonomy reference database management

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Seasonal Shifts in Diet and Gut Microbiota of the American Bison (Bison bison)

Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis

Physiological and cognitive changes after treatments of cyclophosphamide, methotrexate, and fluorouracil: implications of the gut microbiome and depressive-like behavior

Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes

Global distribution of Polaromonas phylotypes--evidence for a highly successful dispersal capacity

Mixed ancestry from wild and domestic lineages contributes to the rapid expansion of invasive feral swine

Short-Term Metformin Treatment Enriches Bacteroides dorei in an Obese Liver Steatosis Zucker Rat Model

Gut Microbes Are Associated with the Vascular Beneficial Effects of Dietary Strawberry on Metabolic Syndrome‐Induced Vascular Inflammation

Microbial community composition and diversity in Caspian Sea sediments

Characterizing microbial communities through space and time

Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa)

Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

Dispersal, niche breadth and population extinction: colonization ratios predict range size in North American dragonflies

Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods

Multi-omics data integration considerations and study design for biological systems and disease

Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments

Gastrointestinal Tract Dysbiosis Enhances Distal Tumor Progression through Suppression of Leukocyte Trafficking

Interspecific Plant Interactions Reflected in Soil Bacterial Community Structure and Nitrogen Cycling in Primary Succession

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

Bacterial and Fungal Adaptations in Cecum and Distal Colon of Piglets Fed With Dairy-Based Milk Formula in Comparison With Human Milk

Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally

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