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V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data

Bioinformatics, 2021-07, Vol.37 (12), p.1673-1680

2021

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Parallel Evolution of HIV-1 in a Long-Term Experiment

Molecular biology and evolution, 2019-11, Vol.36 (11), p.2400-2414

2019

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Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART

Nature communications, 2019-07, Vol.10 (1), p.3193-11, Article 3193

2019

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Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

Frontiers in microbiology, 2012-01, Vol.3, p.329-329

2012

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Long-term experimental evolution of HIV-1 reveals effects of environment and mutational history

PLoS biology, 2020-12, Vol.18 (12), p.e3001010

2020

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Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality

PLoS pathogens, 2017-03, Vol.13 (3), p.e1006255-e1006255

2017

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Transcriptome profiles of latently- and reactivated HIV-1 infected primary CD4+ T cells: A pooled data-analysis

Frontiers in immunology, 2022-08, Vol.13, p.915805-915805

2022

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Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

Nucleic acids research, 2014-08, Vol.42 (14), p.e115

2014

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Reversal of T Cell Exhaustion in Chronic HCV Infection

Viruses, 2020-07, Vol.12 (8), p.799

2020

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Minority Quasispecies of Drug-Resistant HIV-1 That Lead to Early Therapy Failure in Treatment-Naive and -Adherent Patients

Clinical infectious diseases, 2009-01, Vol.48 (2), p.239-247

2009

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Costs and acceptability of simplified monitoring in HIV-suppressed patients switching to dual therapy: the SIMPL'HIV open-label, factorial randomised controlled trial

Swiss medical weekly, 2024-04, Vol.154, p.3762

2024

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Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination

PloS one, 2013-09, Vol.8 (9), p.e74249-e74249

2013

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Quantification of transgene expression in GSH AAVS1 with a novel CRISPR/Cas9-based approach reveals high transcriptional variation

Molecular therapy. Methods & clinical development, 2022-09, Vol.26, p.107-118

2022

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Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART

Nature communications, 2020-11, Vol.11 (1), p.1-11, Article 5542

2020

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A Comprehensive Analysis of Primer IDs to Study Heterogeneous HIV-1 Populations

Journal of molecular biology, 2016-01, Vol.428 (1), p.238-250

2016

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Profound depletion of HIV-1 transcription in patients initiating antiretroviral therapy during acute infection

PloS one, 2010-10, Vol.5 (10), p.e13310-e13310

2010

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Efficient Suppression of Minority Drug-Resistant HIV Type 1 (HIV-1) Variants Present at Primary HIV-1 Infection by Ritonavir-Boosted Protease Inhibitor-Containing Antiretroviral Therapy

The Journal of infectious diseases, 2010-04, Vol.201 (7), p.1063-1071

2010

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Emergence of Resistance to Integrase Strand Transfer Inhibitors during Dolutegravir Containing Triple-Therapy in a Treatment-Experienced Patient with Pre-Existing M184V/I Mutation

Viruses, 2020-11, Vol.12 (11), p.1330

2020

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HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages

PloS one, 2015-07, Vol.10 (7), p.e0132127-e0132127

2015

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A Novel High Throughput, Parallel Infection Assay for Determining the Replication Capacities of 346 Primary HIV-1 Isolates of the Zurich Primary HIV-1 Infection Study in Primary Cells

Viruses, 2021-03, Vol.13 (3), p.404

2021

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Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples

Microbiome, 2017-08, Vol.5 (1), p.94-94, Article 94

2017

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Impact of Minority Nonnucleoside Reverse Transcriptase Inhibitor Resistance Mutations on Resistance Genotype After Virologic Failure

The Journal of infectious diseases, 2013-03, Vol.207 (6), p.893-897

2013

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An Approach to Quantifying the Interaction between Behavioral and Transmission Clusters

Viruses, 2022-04, Vol.14 (4), p.784

2022

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Detecting Selection in the HIV-1 Genome during Sexual Transmission Events

Viruses, 2022-02, Vol.14 (2), p.406

2022

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V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data

Parallel Evolution of HIV-1 in a Long-Term Experiment

Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

Long-term experimental evolution of HIV-1 reveals effects of environment and mutational history

Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality

Transcriptome profiles of latently- and reactivated HIV-1 infected primary CD4+ T cells: A pooled data-analysis

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

Reversal of T Cell Exhaustion in Chronic HCV Infection

Efficacy and safety of dolutegravir plus emtricitabine versus standard ART for the maintenance of HIV-1 suppression: 48-week results of the factorial, randomized, non-inferiority SIMPL'HIV trial

Minority Quasispecies of Drug-Resistant HIV-1 That Lead to Early Therapy Failure in Treatment-Naive and -Adherent Patients

Costs and acceptability of simplified monitoring in HIV-suppressed patients switching to dual therapy: the SIMPL'HIV open-label, factorial randomised controlled trial

Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination

Quantification of transgene expression in GSH AAVS1 with a novel CRISPR/Cas9-based approach reveals high transcriptional variation

Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART

A Comprehensive Analysis of Primer IDs to Study Heterogeneous HIV-1 Populations

Profound depletion of HIV-1 transcription in patients initiating antiretroviral therapy during acute infection

Efficient Suppression of Minority Drug-Resistant HIV Type 1 (HIV-1) Variants Present at Primary HIV-1 Infection by Ritonavir-Boosted Protease Inhibitor-Containing Antiretroviral Therapy

Emergence of Resistance to Integrase Strand Transfer Inhibitors during Dolutegravir Containing Triple-Therapy in a Treatment-Experienced Patient with Pre-Existing M184V/I Mutation

HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages

A Novel High Throughput, Parallel Infection Assay for Determining the Replication Capacities of 346 Primary HIV-1 Isolates of the Zurich Primary HIV-1 Infection Study in Primary Cells

Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples

Impact of Minority Nonnucleoside Reverse Transcriptase Inhibitor Resistance Mutations on Resistance Genotype After Virologic Failure

An Approach to Quantifying the Interaction between Behavioral and Transmission Clusters

Detecting Selection in the HIV-1 Genome during Sexual Transmission Events

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