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Modeling Lignin Polymerization. I. Simulation Model of Dehydrogenation Polymers

Plant physiology (Bethesda), 2010-07, Vol.153 (3), p.1332-1344

2010

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Chiral stresses in nematic cell monolayers

Soft matter, 2020-01, Vol.16 (3), p.764-774

2020

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Cell Contractility Facilitates Alignment of Cells and Tissues to Static Uniaxial Stretch

Biophysical journal, 2017-02, Vol.112 (4), p.755-766

2017

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Mechanical cell-matrix feedback explains pairwise and collective endothelial cell behavior in vitro

PLoS computational biology, 2014-08, Vol.10 (8), p.e1003774-e1003774

2014

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Mechanical interplay between cell shape and actin cytoskeleton organization

Soft matter, 2020-07, Vol.16 (27), p.6328-6343

2020

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Cell Shape and Durotaxis Explained from Cell-Extracellular Matrix Forces and Focal Adhesion Dynamics

iScience, 2020-09, Vol.23 (9), p.101488-101488, Article 101488

2020

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The use of Gompertz models in growth analyses, and new Gompertz-model approach: An addition to the Unified-Richards family

PloS one, 2017-06, Vol.12 (6), p.e0178691-e0178691

2017

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VirtualLeaf: An Open-Source Framework for Cell-Based Modeling of Plant Tissue Growth and Development

Plant physiology (Bethesda), 2011-02, Vol.155 (2), p.656-666

2011

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SHORT-ROOT and SCARECROW Regulate Leaf Growth in Arabidopsis by Stimulating S-Phase Progression of the Cell Cycle

Plant physiology (Bethesda), 2010-11, Vol.154 (3), p.1183-1195

2010

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Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization

PLoS computational biology, 2020-03, Vol.16 (3), p.e1007635-e1007635

2020

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Hyaluronan: A critical regulator of endothelial-to-mesenchymal transition during cardiac valve formation

Trends in cardiovascular medicine, 2013-07, Vol.23 (5), p.135-142

2013

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Rumor diffusion and convergence during the 3.11 earthquake: a twitter case study

PloS one, 2015-04, Vol.10 (4), p.e0121443-e0121443

2015

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Changes in bleaching susceptibility among corals subject to ocean warming and recurrent bleaching in Moorea, French Polynesia

PloS one, 2013-07, Vol.8 (7), p.e70443-e70443

2013

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Cell elongation is key to in silico replication of in vitro vasculogenesis and subsequent remodeling

Developmental biology, 2006-01, Vol.289 (1), p.44-54

2006

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From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development

Computing in science & engineering, 2007-07, Vol.9 (4), p.50-60

2007

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A multiscale model of complex endothelial cell dynamics in early angiogenesis

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008055-e1008055

2021

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A new perfusion culture method with a self-organized capillary network

PloS one, 2020-10, Vol.15 (10), p.e0240552-e0240552

2020

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2′-Fucosyllactose helps butyrate producers outgrow competitors in infant gut microbiota simulations

iScience, 2024-03, Vol.27 (3), p.109085-109085, Article 109085

2024

Volltextzugriff (PDF)

Limited hyperoxia-induced proliferative retinopathy: A model of persistent retinal vascular dysfunction, preretinal fibrosis and hyaloidal vascular reprogramming for retinal rescue

PloS one, 2022-04, Vol.17 (4), p.e0267576-e0267576

2022

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Quantifying cell transitions in C. elegans with data-fitted landscape models

PLoS computational biology, 2021-06, Vol.17 (6), p.e1009034-e1009034

2021

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Measurements of the number of specified and unspecified cells in the shoot apical meristem during a plastochron in rice (Oryza sativa) reveal the robustness of cellular specification process in plant development

PloS one, 2022-06, Vol.17 (6), p.e0269374-e0269374

2022

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Simulations of dynamically cross-linked actin networks: Morphology, rheology, and hydrodynamic interactions

PLoS computational biology, 2021-12, Vol.17 (12), p.e1009240

2021

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Cargo surface fluidity can reduce inter-motor mechanical interference, promote load-sharing and enhance processivity in teams of molecular motors

PLoS computational biology, 2022-06, Vol.18 (6), p.e1010217-e1010217

2022

Volltextzugriff (PDF)

The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model

PLoS computational biology, 2020, Vol.16 (1), p.e1007250-e1007250

2020

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Voxelized simulation of cerebral oxygen perfusion elucidates hypoxia in aged mouse cortex

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008584-e1008584

2021

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Modeling Lignin Polymerization. I. Simulation Model of Dehydrogenation Polymers

Chiral stresses in nematic cell monolayers

Cell Contractility Facilitates Alignment of Cells and Tissues to Static Uniaxial Stretch

Mechanical cell-matrix feedback explains pairwise and collective endothelial cell behavior in vitro

Mechanical interplay between cell shape and actin cytoskeleton organization

Cell Shape and Durotaxis Explained from Cell-Extracellular Matrix Forces and Focal Adhesion Dynamics

The use of Gompertz models in growth analyses, and new Gompertz-model approach: An addition to the Unified-Richards family

VirtualLeaf: An Open-Source Framework for Cell-Based Modeling of Plant Tissue Growth and Development

SHORT-ROOT and SCARECROW Regulate Leaf Growth in Arabidopsis by Stimulating S-Phase Progression of the Cell Cycle

Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization

Hyaluronan: A critical regulator of endothelial-to-mesenchymal transition during cardiac valve formation

Rumor diffusion and convergence during the 3.11 earthquake: a twitter case study

Changes in bleaching susceptibility among corals subject to ocean warming and recurrent bleaching in Moorea, French Polynesia

Cell elongation is key to in silico replication of in vitro vasculogenesis and subsequent remodeling

From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development

A multiscale model of complex endothelial cell dynamics in early angiogenesis

A new perfusion culture method with a self-organized capillary network

2′-Fucosyllactose helps butyrate producers outgrow competitors in infant gut microbiota simulations

Limited hyperoxia-induced proliferative retinopathy: A model of persistent retinal vascular dysfunction, preretinal fibrosis and hyaloidal vascular reprogramming for retinal rescue

Quantifying cell transitions in C. elegans with data-fitted landscape models

Measurements of the number of specified and unspecified cells in the shoot apical meristem during a plastochron in rice (Oryza sativa) reveal the robustness of cellular specification process in plant development

Simulations of dynamically cross-linked actin networks: Morphology, rheology, and hydrodynamic interactions

Cargo surface fluidity can reduce inter-motor mechanical interference, promote load-sharing and enhance processivity in teams of molecular motors

The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model

Voxelized simulation of cerebral oxygen perfusion elucidates hypoxia in aged mouse cortex

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