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A proline switch explains kinetic heterogeneity in a coupled folding and binding reaction

Nature communications, 2018-08, Vol.9 (1), p.3332-10, Article 3332

2018

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Plasticity of an Ultrafast Interaction between Nucleoporins and Nuclear Transport Receptors

Cell, 2015-10, Vol.163 (3), p.734-745

2015

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Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements

Proceedings of the National Academy of Sciences - PNAS, 2017-08, Vol.114 (31), p.E6342-E6351

2017

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α-Synuclein plasma membrane localization correlates with cellular phosphatidylinositol polyphosphate levels

eLife, 2021-02, Vol.10

2021

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Mechanoradicals in tensed tendon collagen as a source of oxidative stress

Nature communications, 2020-05, Vol.11 (1), p.2315-2315, Article 2315

2020

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Release of linker histone from the nucleosome driven by polyelectrolyte competition with a disordered protein

Nature chemistry, 2022-02, Vol.14 (2), p.224

2022

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Davide Mercadante

Angewandte Chemie (International ed.), 2023-02, Vol.62 (6), p.e202217350-n/a

International ed. in English, 2023

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Kirkwood–Buff Approach Rescues Overcollapse of a Disordered Protein in Canonical Protein Force Fields

The journal of physical chemistry. B, 2015-06, Vol.119 (25), p.7975-7984

2015

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Origin of Orthogonality of Strain‐Promoted Click Reactions

Chemistry : a European journal, 2015-08, Vol.21 (35), p.12431-12435

2015

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DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2

Nature communications, 2024-02, Vol.15 (1), p.1445-1445

2024

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Two Differential Binding Mechanisms of FG-Nucleoporins and Nuclear Transport Receptors

Cell reports (Cambridge), 2018-03, Vol.22 (13), p.3660-3671

2018

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Editorial: Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics

Frontiers in molecular biosciences, 2021-11, Vol.8, p.795991-795991

2021

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Processive pectin methylesterases: the role of electrostatic potential, breathing motions and bond cleavage in the rectification of Brownian motions

PloS one, 2014-02, Vol.9 (2), p.e87581-e87581

2014

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Substrate Dynamics in Enzyme Action: Rotations of Monosaccharide Subunits in the Binding Groove are Essential for Pectin Methylesterase Processivity

Biophysical journal, 2013-04, Vol.104 (8), p.1731-1739

2013

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CONAN: A Tool to Decode Dynamical Information from Molecular Interaction Maps

Biophysical journal, 2018-03, Vol.114 (6), p.1267-1273

2018

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Mechanical force can enhance c-Src kinase activity by impairing autoinhibition

Biophysical journal, 2022-03, Vol.121 (5), p.684-691

2022

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Structural and mechanistic insights into mechanoactivation of focal adhesion kinase

Proceedings of the National Academy of Sciences - PNAS, 2019-04, Vol.116 (14), p.6766-6774

2019

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DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2

Biophysical journal, 2024-02, Vol.123 (3), p.73a-73a

2024

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A Proline Switch Explains Kinetic Heterogeneity in a Coupled Folding and Binding Reaction

Biophysical journal, 2019-02, Vol.116 (3), p.179a-179a

2019

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Phosphorylation refines the control of complex formation in IDPs

Biophysical journal, 2023-02, Vol.122 (3), p.344a-345a

2023

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Probing the Paradigm of Promiscuity for N‐Heterocyclic Carbene Complexes and their Protein Adduct Formation

Angewandte Chemie (International ed.), 2021-09, Vol.60 (36), p.19928-19932

International ed. in English, 2021

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Multilayered allosteric modulation of coupled folding and binding by phosphorylation, peptidyl-prolyl cis/trans isomerization, and diversity of interaction partners

The Journal of chemical physics, 2022-12, Vol.157 (23), p.235102-235102

2022

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Front Cover: On the electrophoretic mobilities of partially charged oligosaccharides as a function of charge patterning and degree of polymerization

Electrophoresis, 2018-06, Vol.39 (12), p.NA

2018

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Simulating Polyproline II-Helix-Rich Peptides with the Latest Kirkwood–Buff Force Field: A Direct Comparison with AMBER and CHARMM

The journal of physical chemistry. B, 2022-10, Vol.126 (40), p.7833-7846

2022

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Design of a Protein with Improved Thermal Stability by an Evolution‐Based Generative Model

Angewandte Chemie (International ed.), 2022-12, Vol.61 (50), p.e202202711-n/a

International ed. in English, 2022

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A proline switch explains kinetic heterogeneity in a coupled folding and binding reaction

Plasticity of an Ultrafast Interaction between Nucleoporins and Nuclear Transport Receptors

Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements

α-Synuclein plasma membrane localization correlates with cellular phosphatidylinositol polyphosphate levels

Mechanoradicals in tensed tendon collagen as a source of oxidative stress

Release of linker histone from the nucleosome driven by polyelectrolyte competition with a disordered protein

Davide Mercadante

Kirkwood–Buff Approach Rescues Overcollapse of a Disordered Protein in Canonical Protein Force Fields

Origin of Orthogonality of Strain‐Promoted Click Reactions

DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2

Two Differential Binding Mechanisms of FG-Nucleoporins and Nuclear Transport Receptors

Editorial: Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics

Processive pectin methylesterases: the role of electrostatic potential, breathing motions and bond cleavage in the rectification of Brownian motions

Substrate Dynamics in Enzyme Action: Rotations of Monosaccharide Subunits in the Binding Groove are Essential for Pectin Methylesterase Processivity

CONAN: A Tool to Decode Dynamical Information from Molecular Interaction Maps

Mechanical force can enhance c-Src kinase activity by impairing autoinhibition

Structural and mechanistic insights into mechanoactivation of focal adhesion kinase

DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2

A Proline Switch Explains Kinetic Heterogeneity in a Coupled Folding and Binding Reaction

Phosphorylation refines the control of complex formation in IDPs

Probing the Paradigm of Promiscuity for N‐Heterocyclic Carbene Complexes and their Protein Adduct Formation

Multilayered allosteric modulation of coupled folding and binding by phosphorylation, peptidyl-prolyl cis/trans isomerization, and diversity of interaction partners

Front Cover: On the electrophoretic mobilities of partially charged oligosaccharides as a function of charge patterning and degree of polymerization

Simulating Polyproline II-Helix-Rich Peptides with the Latest Kirkwood–Buff Force Field: A Direct Comparison with AMBER and CHARMM

Design of a Protein with Improved Thermal Stability by an Evolution‐Based Generative Model

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