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Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

Nucleic acids research, 2008-12, Vol.36 (21), p.e141

2008

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A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches

BMC bioinformatics, 2024-02, Vol.25 (1), p.58-58, Article 58

2024

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MicroRNA characterize genetic diversity and drug resistance in pediatric acute lymphoblastic leukemia

Haematologica (Roma), 2011-05, Vol.96 (5), p.703-711

2011

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High-throughput RNAi screening reveals cancer-selective lethal targets in the RNA spliceosome

Oncogene, 2019-05, Vol.38 (21), p.4142-4153

2019

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Neoadjuvant cisplatin and paclitaxel modulate tumor-infiltrating T cells in patients with cervical cancer

Cancer Immunology, Immunotherapy, 2019-11, Vol.68 (11), p.1759-1767

2019

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Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly

Molecular cell, 2023-12, Vol.83 (23), p.4205-4221.e9

2023

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Delta-Like Ligand-Notch1 Signaling Is Selectively Modulated by HPV16 E6 to Promote Squamous Cell Proliferation and Correlates with Cervical Cancer Prognosis

Cancer research (Chicago, Ill.), 2021-04, Vol.81 (7), p.1909-1921

2021

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The FA/BRCA Pathway Identified as the Major Predictor of Cisplatin Response in Head and Neck Cancer by Functional Genomics

Molecular cancer therapeutics, 2017-03, Vol.16 (3), p.540-550

2017

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Electronic Nose Sensor Drift Affects Diagnostic Reliability and Accuracy of Disease-Specific Algorithms

Sensors (Basel, Switzerland), 2022-11, Vol.22 (23), p.9246

2022

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Filtering, FDR and power

BMC bioinformatics, 2010-09, Vol.11 (1), p.450-450, Article 450

2010

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Functional Screen for microRNAs Suppressing Anchorage-Independent Growth in Human Cervical Cancer Cells

International journal of molecular sciences, 2022-04, Vol.23 (9), p.4791

2022

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Chemopreventive targeted treatment of head and neck precancer by Wee1 inhibition

Scientific reports, 2020-02, Vol.10 (1), p.2330-2330, Article 2330

2020

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Distinct Patterns of Myeloid Cell Infiltration in Patients With hrHPV-Positive and hrHPV-Negative Penile Squamous Cell Carcinoma: The Importance of Assessing Myeloid Cell Densities Within the Spatial Context of the Tumor

Frontiers in immunology, 2021-06, Vol.12, p.682030-682030

2021

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A test for detecting differential indirect trans effects between two groups of samples

Statistical applications in genetics and molecular biology, 2018-07, Vol.17 (5)

2018

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Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection

BMC bioinformatics, 2018-08, Vol.19 (1), p.301-301, Article 301

2018

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Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack

BMC bioinformatics, 2016-02, Vol.17 (59), p.77-77, Article 77

2016

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Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions

Nucleic acids research, 2013-08, Vol.41 (15), p.e146

2013

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Testing for association between RNA-Seq and high-dimensional data

BMC bioinformatics, 2016-03, Vol.17 (95), p.118-118, Article 118

2016

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Integrated analysis of DNA copy number and gene expression microarray data using gene sets

BMC bioinformatics, 2009-06, Vol.10 (1), p.203-203, Article 203

2009

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Quantile smoothing of array CGH data

Bioinformatics, 2005-04, Vol.21 (7), p.1146-1153

2005

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MicroRNA Profiling Can Classify Acute Leukemias of Ambiguous Lineage as Either Acute Myeloid Leukemia or Acute Lymphoid Leukemia

Clinical cancer research, 2013-04, Vol.19 (8), p.2187-2196

2013

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Sparse classification with paired covariates

Advances in data analysis and classification, 2020-09, Vol.14 (3), p.571-588

2020

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Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

BMC bioinformatics, 2012-05, Vol.13 (1), p.80-80, Article 80

2012

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A global × global test for testing associations between two large sets of variables

Biometrical journal, 2017-01, Vol.59 (1), p.145-158

2017

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Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches

MicroRNA characterize genetic diversity and drug resistance in pediatric acute lymphoblastic leukemia

High-throughput RNAi screening reveals cancer-selective lethal targets in the RNA spliceosome

Neoadjuvant cisplatin and paclitaxel modulate tumor-infiltrating T cells in patients with cervical cancer

Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly

Delta-Like Ligand-Notch1 Signaling Is Selectively Modulated by HPV16 E6 to Promote Squamous Cell Proliferation and Correlates with Cervical Cancer Prognosis

A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: a genome-wide classification study

The FA/BRCA Pathway Identified as the Major Predictor of Cisplatin Response in Head and Neck Cancer by Functional Genomics

Electronic Nose Sensor Drift Affects Diagnostic Reliability and Accuracy of Disease-Specific Algorithms

Filtering, FDR and power

Functional Screen for microRNAs Suppressing Anchorage-Independent Growth in Human Cervical Cancer Cells

Chemopreventive targeted treatment of head and neck precancer by Wee1 inhibition

Distinct Patterns of Myeloid Cell Infiltration in Patients With hrHPV-Positive and hrHPV-Negative Penile Squamous Cell Carcinoma: The Importance of Assessing Myeloid Cell Densities Within the Spatial Context of the Tumor

A test for detecting differential indirect trans effects between two groups of samples

Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection

Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack

Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions

Testing for association between RNA-Seq and high-dimensional data

Integrated analysis of DNA copy number and gene expression microarray data using gene sets

Quantile smoothing of array CGH data

MicroRNA Profiling Can Classify Acute Leukemias of Ambiguous Lineage as Either Acute Myeloid Leukemia or Acute Lymphoid Leukemia

Sparse classification with paired covariates

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

A global × global test for testing associations between two large sets of variables

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