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A competence-regulated toxin-antitoxin system in Haemophilus influenzae

PloS one, 2020-01, Vol.15 (1), p.e0217255

2020

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Natural Competence and the Evolution of DNA Uptake Specificity

Journal of bacteriology, 2014-04, Vol.196 (8), p.1471-1483

2014

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Maf1‐dependent transcriptional regulation of tRNAs prevents genomic instability and is associated with extended lifespan

Aging cell, 2020-02, Vol.19 (2), p.e13068-n/a

2020

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Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network

PLoS computational biology, 2021-09, Vol.17 (9), p.e1009345-e1009345

2021

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Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

Microbiome, 2018-10, Vol.6 (1), p.190-190, Article 190

2018

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A long-read sequencing strategy with overlapping linkers on adjacent fragments (OLAF-Seq) for targeted resequencing and enrichment

Scientific reports, 2024-03, Vol.14 (1), p.5583-5583, Article 5583

2024

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Lung transcriptional unresponsiveness and loss of early influenza virus control in infected neonates is prevented by intranasal Lactobacillus rhamnosus GG

PLoS pathogens, 2019-10, Vol.15 (10), p.e1008072-e1008072

2019

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Beyond the pan-genome: current perspectives on the functional and practical outcomes of the distributed genome hypothesis

Biochemical Society transactions, 2020-12, Vol.48 (6), p.2437-2455

2020

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Designing broad-spectrum anti-HIV-1 gRNAs to target patient-derived variants

Scientific reports, 2017-10, Vol.7 (1), p.14413-7, Article 14413

2017

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Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

PloS one, 2019-12, Vol.14 (12), p.e0219235-e0219235

2019

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Novel gRNA design pipeline to develop broad-spectrum CRISPR/Cas9 gRNAs for safe targeting of the HIV-1 quasispecies in patients

Scientific reports, 2019-11, Vol.9 (1), p.17088-19, Article 17088

2019

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Transformation of natural genetic variation into Haemophilus influenzae genomes

PLoS pathogens, 2011-07, Vol.7 (7), p.e1002151-e1002151

2011

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Defining the DNA uptake specificity of naturally competent Haemophilus influenzae cells

Nucleic acids research, 2012-09, Vol.40 (17), p.8536

2012

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Transition of Serotype 35B Pneumococci From Commensal to Prevalent Virulent Strain in Children

Frontiers in cellular and infection microbiology, 2021-10, Vol.11, p.744742-744742

2021

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Broad-Spectrum and Personalized Guide RNAs for CRISPR/Cas9 HIV-1 Therapeutics

AIDS research and human retroviruses, 2018-11, Vol.34 (11), p.950

2018

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Local Adaptation and the Evolution of Genome Architecture in Threespine Stickleback

Genome biology and evolution, 2022-05, Vol.14 (6)

2022

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Analysis of Close Stable Homolog Juxtaposition During Meiosis in Mutants of Saccharomyces cerevisiae

Genetics (Austin), 2006-07, Vol.173 (3), p.1207-1222

2006

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Characterization of nontypable Haemophilus influenzae isolates recovered from adult patients with underlying chronic lung disease reveals genotypic and phenotypic traits associated with persistent infection

PloS one, 2014-05, Vol.9 (5), p.e97020-e97020

2014

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Genetic Adaptation and Acquisition of Macrolide Resistance in Haemophilus spp. during Persistent Respiratory Tract Colonization in Chronic Obstructive Pulmonary Disease (COPD) Patients Receiving Long-Term Azithromycin Treatment

Microbiology spectrum, 2023-02, Vol.11 (1), p.e0386022-e0386022

2023

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Transformed Recombinant Enrichment Profiling Rapidly Identifies HMW1 as an Intracellular Invasion Locus in Haemophilus influenza

PLoS pathogens, 2016-04, Vol.12 (4), p.e1005576-e1005576

2016

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Genome-wide analysis of DNA uptake across the outer membrane of naturally competent Haemophilus influenzae

iScience, 2021-01, Vol.24 (1), p.102007-102007, Article 102007

2021

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Mitochondrial Haplogroup Influences Motor Function in Long-Term HIV-1-Infected Individuals

PloS one, 2016-10, Vol.11 (10), p.e0163772-e0163772

2016

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Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs

Genome biology and evolution, 2015-03, Vol.7 (3), p.689-698

2015

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Maf1 limits RNA polymerase III-directed transcription to preserve genomic integrity and extend lifespan

Cell cycle (Georgetown, Tex.), 2021-02, Vol.20 (3), p.247-255

2021

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A competence-regulated toxin-antitoxin system in Haemophilus influenzae

Natural Competence and the Evolution of DNA Uptake Specificity

Maf1‐dependent transcriptional regulation of tRNAs prevents genomic instability and is associated with extended lifespan

Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

A long-read sequencing strategy with overlapping linkers on adjacent fragments (OLAF-Seq) for targeted resequencing and enrichment

Lung transcriptional unresponsiveness and loss of early influenza virus control in infected neonates is prevented by intranasal Lactobacillus rhamnosus GG

Beyond the pan-genome: current perspectives on the functional and practical outcomes of the distributed genome hypothesis

Designing broad-spectrum anti-HIV-1 gRNAs to target patient-derived variants

Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Novel gRNA design pipeline to develop broad-spectrum CRISPR/Cas9 gRNAs for safe targeting of the HIV-1 quasispecies in patients

Transformation of natural genetic variation into Haemophilus influenzae genomes

Defining the DNA uptake specificity of naturally competent Haemophilus influenzae cells

Transition of Serotype 35B Pneumococci From Commensal to Prevalent Virulent Strain in Children

Broad-Spectrum and Personalized Guide RNAs for CRISPR/Cas9 HIV-1 Therapeutics

Local Adaptation and the Evolution of Genome Architecture in Threespine Stickleback

Antagonistic Pleiotropy in the Bifunctional Surface Protein FadL (OmpP1) during Adaptation of Haemophilus influenzae to Chronic Lung Infection Associated with Chronic Obstructive Pulmonary Disease

Analysis of Close Stable Homolog Juxtaposition During Meiosis in Mutants of Saccharomyces cerevisiae

Characterization of nontypable Haemophilus influenzae isolates recovered from adult patients with underlying chronic lung disease reveals genotypic and phenotypic traits associated with persistent infection

Genetic Adaptation and Acquisition of Macrolide Resistance in Haemophilus spp. during Persistent Respiratory Tract Colonization in Chronic Obstructive Pulmonary Disease (COPD) Patients Receiving Long-Term Azithromycin Treatment

Transformed Recombinant Enrichment Profiling Rapidly Identifies HMW1 as an Intracellular Invasion Locus in Haemophilus influenza

Genome-wide analysis of DNA uptake across the outer membrane of naturally competent Haemophilus influenzae

Mitochondrial Haplogroup Influences Motor Function in Long-Term HIV-1-Infected Individuals

Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs

Maf1 limits RNA polymerase III-directed transcription to preserve genomic integrity and extend lifespan

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