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Endosymbiotic origin and differential loss of eukaryotic genes

Nature (London), 2015-08, Vol.524 (7566), p.427-432

2015

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Metazoan opsin evolution reveals a simple route to animal vision

Proceedings of the National Academy of Sciences - PNAS, 2012-11, Vol.109 (46), p.18868-18872

2012

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The hybrid nature of the Eukaryota and a consilient view of life on Earth

Nature reviews. Microbiology, 2014-06, Vol.12 (6), p.449-455

2014

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Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

PLoS genetics, 2016-09, Vol.12 (9), p.e1006280

2016

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Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea

Proceedings of the National Academy of Sciences - PNAS, 2012-12, Vol.109 (50), p.20537-20542

2012

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Horizontal Gene Transfer as a Source of Conflict and Cooperation in Prokaryotes

Frontiers in microbiology, 2020-07, Vol.11, p.1569-1569

2020

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Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function

Proceedings of the National Academy of Sciences - PNAS, 2010-10, Vol.107 (40), p.17252-17255

2010

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Function-related replacement of bacterial siderophore pathways

The ISME Journal, 2018-02, Vol.12 (2), p.320-329

2018

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Supertrees Disentangle the Chimerical Origin of Eukaryotic Genomes

Molecular biology and evolution, 2007-08, Vol.24 (8), p.1752-1760

2007

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Gene similarity networks provide tools for understanding eukaryote origins and evolution

Proceedings of the National Academy of Sciences - PNAS, 2013-04, Vol.110 (17), p.E1594-E1603

2013

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Prokaryotic Pangenomes Act as Evolving Ecosystems

Molecular biology and evolution, 2023-01, Vol.40 (1)

2023

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Evolutionary analyses of non-genealogical bonds produced by introgressive descent

Proceedings of the National Academy of Sciences - PNAS, 2012-11, Vol.109 (45), p.18266-18272

2012

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"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis

Genome biology and evolution, 2016-05, Vol.8 (5), p.1388-1400

2016

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TOPD/FMTS: a new software to compare phylogenetic trees

Bioinformatics, 2007-06, Vol.23 (12), p.1556-1558

2007

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The Public Goods Hypothesis for the evolution of life on Earth

Biology direct, 2011-08, Vol.6 (1), p.41-41

2011

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Formation of chimeric genes with essential functions at the origin of eukaryotes

BMC biology, 2018-03, Vol.16 (1), p.30-30, Article 30

2018

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Eukaryote Genes Are More Likely than Prokaryote Genes to Be Composites

Genes, 2019-08, Vol.10 (9), p.648

2019

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Mechanisms That Shape Microbial Pangenomes

Trends in microbiology (Regular ed.), 2021-06, Vol.29 (6), p.493-503

2021

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New approaches for unravelling reassortment pathways

BMC evolutionary biology, 2013-01, Vol.13 (1), p.1, Article 1

2013

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Why prokaryotes have pangenomes

Nature microbiology, 2017-03, Vol.2 (4), Article 17040

2017

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Horizontal gene transfer is less frequent in eukaryotes than prokaryotes but can be important (retrospective on DOI 10.1002/bies.201300095)

BioEssays, 2017-06, Vol.39 (6), p.n/a

McInerney, James O.

2017

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Evidence for Selection in the Abundant Accessory Gene Content of a Prokaryote Pangenome

Molecular biology and evolution, 2021-09, Vol.38 (9), p.3697-3708

2021

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Method for Inferring the Rate of Evolution of Homologous Characters that Can Potentially Improve Phylogenetic Inference, Resolve Deep Divergence and Correct Systematic Biases

Systematic biology, 2011-12, Vol.60 (6), p.833-844

2011

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Contingency, repeatability, and predictability in the evolution of a prokaryotic pangenome

Proceedings of the National Academy of Sciences - PNAS, 2024-01, Vol.121 (1), p.e2304934120-e2304934120

2024

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Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears

Endosymbiotic origin and differential loss of eukaryotic genes

Metazoan opsin evolution reveals a simple route to animal vision

The hybrid nature of the Eukaryota and a consilient view of life on Earth

Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea

Horizontal Gene Transfer as a Source of Conflict and Cooperation in Prokaryotes

Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function

Function-related replacement of bacterial siderophore pathways

Supertrees Disentangle the Chimerical Origin of Eukaryotic Genomes

Gene similarity networks provide tools for understanding eukaryote origins and evolution

Prokaryotic Pangenomes Act as Evolving Ecosystems

Evolutionary analyses of non-genealogical bonds produced by introgressive descent

"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis

TOPD/FMTS: a new software to compare phylogenetic trees

The Public Goods Hypothesis for the evolution of life on Earth

Formation of chimeric genes with essential functions at the origin of eukaryotes

Eukaryote Genes Are More Likely than Prokaryote Genes to Be Composites

Mechanisms That Shape Microbial Pangenomes

New approaches for unravelling reassortment pathways

Why prokaryotes have pangenomes

Horizontal gene transfer is less frequent in eukaryotes than prokaryotes but can be important (retrospective on DOI 10.1002/bies.201300095)

Evidence for Selection in the Abundant Accessory Gene Content of a Prokaryote Pangenome

Method for Inferring the Rate of Evolution of Homologous Characters that Can Potentially Improve Phylogenetic Inference, Resolve Deep Divergence and Correct Systematic Biases

Contingency, repeatability, and predictability in the evolution of a prokaryotic pangenome

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