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ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

Nucleic acids research, 2005-07, Vol.33 (Web Server issue), p.W299-W302

2005

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Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

Molecular biology and evolution, 2004-09, Vol.21 (9), p.1781-1791

2004

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Genomic insights into genetic diploidization in the homosporous fern Adiantum nelumboides

Genome biology and evolution, 2022-08, Vol.14 (8)

2022

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A Machine Learning Framework Identifies Plastid-Encoded Proteins Harboring C3 and C4 Distinguishing Sequence Information

Genome biology and evolution, 2023-07, Vol.15 (7)

2023

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Comparative analysis reveals that polyploidy does not decelerate diversification in fish

Journal of evolutionary biology, 2014-02, Vol.27 (2), p.391-403

2014

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A Gamma mixture model better accounts for among site rate heterogeneity

Bioinformatics, 2005-09, Vol.21 (suppl-2), p.ii151-ii158

2005

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Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

Bioinformatics, 2002-07, Vol.18 (suppl-1), p.S71-S77

2002

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Tree of Sex: A database of sexual systems

Scientific data, 2014-06, Vol.1 (1), p.140015-140015, Article 140015

2014

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Evolutionary Models Accounting for Layers of Selection in Protein-Coding Genes and their Impact on the Inference of Positive Selection

Molecular biology and evolution, 2011-12, Vol.28 (12), p.3297-3308

2011

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Selecton: a server for detecting evolutionary forces at a single amino-acid site

Bioinformatics, 2005-05, Vol.21 (9), p.2101-2103

2005

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The DFNA15 Deafness Mutation Affects POU4F3 Protein Stability, Localization, and Transcriptional Activity

Molecular and Cellular Biology, 2003-11, Vol.23 (22), p.7957-7964

2003

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Voting for ecological protection

Science (American Association for the Advancement of Science), 2024-08, Vol.385 (6708), p.505-505

Mayrose, Maya

2024

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Model selection may not be a mandatory step for phylogeny reconstruction

Nature communications, 2019-02, Vol.10 (1), p.934-934, Article 934

2019

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ChromEvol: assessing the pattern of chromosome number evolution and the inference of polyploidy along a phylogeny

Molecular biology and evolution, 2014-07, Vol.31 (7), p.1914-1922

2014

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ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

Nucleic acids research, 2016-07, Vol.44 (W1), p.W344-W350

2016

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Model adequacy tests for probabilistic models of chromosome‐number evolution

The New phytologist, 2021-03, Vol.229 (6), p.3602-3613

2021

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Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

Molecular ecology resources, 2015-09, Vol.15 (5), p.1179-1191

2015

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Does the Release of Bonelli’s Eagles from Captive Breeding Nucleus Contribute to Population Rehabilitation?

Pernatyĭe khishchniki, 2023 (2), p.78-79

Mayrose, A.

2023

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The Effect of Methodological Considerations on the Construction of Gene-Based Plant Pan-genomes

Genome biology and evolution, 2023-07, Vol.15 (7)

2023

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Panoramic: A package for constructing eukaryotic pan‐genomes

Molecular ecology resources, 2021-05, Vol.21 (4), p.1393-1403

2021

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Harnessing machine learning to guide phylogenetic-tree search algorithms

Nature communications, 2021-03, Vol.12 (1), p.1983-1983, Article 1983

2021

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Revising the global biogeography of annual and perennial plants

Nature (London), 2023-12, Vol.624 (7990), p.109-114

2023

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A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action

PLoS computational biology, 2017-10, Vol.13 (10), p.e1005807-e1005807

2017

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Mechanisms Underlying Host Range Variation in Flavivirus: From Empirical Knowledge to Predictive Models

Journal of molecular evolution, 2021-07, Vol.89 (6), p.329-340

2021

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ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages

Genomic insights into genetic diploidization in the homosporous fern Adiantum nelumboides

A Machine Learning Framework Identifies Plastid-Encoded Proteins Harboring C3 and C4 Distinguishing Sequence Information

Comparative analysis reveals that polyploidy does not decelerate diversification in fish

A Gamma mixture model better accounts for among site rate heterogeneity

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

Tree of Sex: A database of sexual systems

Evolutionary Models Accounting for Layers of Selection in Protein-Coding Genes and their Impact on the Inference of Positive Selection

Selecton: a server for detecting evolutionary forces at a single amino-acid site

The DFNA15 Deafness Mutation Affects POU4F3 Protein Stability, Localization, and Transcriptional Activity

Voting for ecological protection

Model selection may not be a mandatory step for phylogeny reconstruction

ChromEvol: assessing the pattern of chromosome number evolution and the inference of polyploidy along a phylogeny

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

Model adequacy tests for probabilistic models of chromosome‐number evolution

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

Does the Release of Bonelli’s Eagles from Captive Breeding Nucleus Contribute to Population Rehabilitation?

The Effect of Methodological Considerations on the Construction of Gene-Based Plant Pan-genomes

Panoramic: A package for constructing eukaryotic pan‐genomes

Harnessing machine learning to guide phylogenetic-tree search algorithms

Revising the global biogeography of annual and perennial plants

A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action

Mechanisms Underlying Host Range Variation in Flavivirus: From Empirical Knowledge to Predictive Models

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