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Evolutionary dynamics of origin and loss in the deep history of phospholipase D toxin genes

BMC evolutionary biology, 2018-12, Vol.18 (1), p.194, Article 194

2018

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Specificity of Loxosceles α clade phospholipase D enzymes for choline-containing lipids: Role of a conserved aromatic cage

PLoS computational biology, 2022-02, Vol.18 (2), p.e1009871-e1009871

2022

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Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds

Proceedings of the National Academy of Sciences - PNAS, 2008-02, Vol.105 (7), p.2343-2348

2008

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A Shift in Aggregation Avoidance Strategy Marks a Long-Term Direction to Protein Evolution

Genetics (Austin), 2019-04, Vol.211 (4), p.1345-1355

2019

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Structural features and the persistence of acquired proteins

Proteomics (Weinheim), 2008-11, Vol.8 (22), p.4772-4781

2008

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Phospholipase D toxins of brown spider venom convert lysophosphatidylcholine and sphingomyelin to cyclic phosphates

PloS one, 2013-08, Vol.8 (8), p.e72372-e72372

2013

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Spider, bacterial and fungal phospholipase D toxins make cyclic phosphate products

Toxicon (Oxford), 2015-12, Vol.108, p.176-180

2015

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Molecular Evolution, Functional Variation, and Proposed Nomenclature of the Gene Family That Includes Sphingomyelinase D in Sicariid Spider Venoms

Molecular biology and evolution, 2009-03, Vol.26 (3), p.547-566

2009

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Lateral gene transfer of a dermonecrotic toxin between spiders and bacteria

Bioinformatics, 2006-02, Vol.22 (3), p.264-268

2006

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Evolution of a Protein Fold In vitro

Science (American Association for the Advancement of Science), 1999-04, Vol.284 (5412), p.325-327

1999

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Sexually dimorphic venom proteins in long-jawed orb-weaving spiders ( Tetragnatha ) comprise novel gene families

PeerJ (San Francisco, CA), 2018-06, Vol.6, p.e4691-e4691, Article e4691

2018

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Sequence Determinants of a Conformational Switch in a Protein Structure

Proceedings of the National Academy of Sciences - PNAS, 2005-12, Vol.102 (51), p.18344-18349

2005

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Determinants of Gas-Phase Disassembly Behavior in Homodimeric Protein Complexes with Related Yet Divergent Structures

Analytical chemistry (Washington), 2011-05, Vol.83 (10), p.3881-3889

2011

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A polymetamorphic protein

Protein science, 2013-05, Vol.22 (5), p.641-649

2013

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Protein salvage and repurposing in evolution: Phospholipase D toxins are stabilized by a remodeled scrap of a membrane association domain

Protein science, 2023-07, Vol.32 (7), p.e4701-n/a

2023

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A role for indels in the evolution of Cro protein folds

Proteins, structure, function, and bioinformatics, 2013-11, Vol.81 (11), p.1988-1996

2013

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The Porous Borders of the Protein World

Structure (London), 2012-02, Vol.20 (2), p.199-200

2012

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Foldability of a Natural De Novo Evolved Protein

Structure (London), 2017-11, Vol.25 (11), p.1687-1696.e4

2017

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Extreme divergence between one-to-one orthologs: the structure of N15 Cro bound to operator DNA and its relationship to the λ Cro complex

Nucleic acids research, 2019-07, Vol.47 (13), p.7118-7129

2019

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Increased sequence hydrophobicity reduces conformational specificity: A mutational case study of the Arc repressor protein

Proteins, structure, function, and bioinformatics, 2019-01, Vol.87 (1), p.23-33

2019

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Variable Substrate Preference among Phospholipase D Toxins from Sicariid Spiders

The Journal of biological chemistry, 2015-04, Vol.290 (17), p.10994-11007

2015

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Multistep mutational transformation of a protein fold through structural intermediates

Protein science, 2018-10, Vol.27 (10), p.1767-1779

2018

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Evolutionary bridges to new protein folds: design of C-terminal Cro protein chameleon sequences

Protein engineering, design and selection, 2011-09, Vol.24 (9), p.765-771

2011

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Relationship between Sequence Determinants of Stability for Two Natural Homologous Proteins with Different Folds

Biochemistry (Easton), 2006-09, Vol.45 (35), p.10542-10553

2006

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Conservation and diversity in the immunity regions of wild phages with the immunity specificity of phage λ

Molecular microbiology, 2007-04, Vol.64 (1), p.232-244

2007

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Evolutionary dynamics of origin and loss in the deep history of phospholipase D toxin genes

Specificity of Loxosceles α clade phospholipase D enzymes for choline-containing lipids: Role of a conserved aromatic cage

Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds

A Shift in Aggregation Avoidance Strategy Marks a Long-Term Direction to Protein Evolution

Structural features and the persistence of acquired proteins

Phospholipase D toxins of brown spider venom convert lysophosphatidylcholine and sphingomyelin to cyclic phosphates

Spider, bacterial and fungal phospholipase D toxins make cyclic phosphate products

Molecular Evolution, Functional Variation, and Proposed Nomenclature of the Gene Family That Includes Sphingomyelinase D in Sicariid Spider Venoms

Lateral gene transfer of a dermonecrotic toxin between spiders and bacteria

Evolution of a Protein Fold In vitro

Sexually dimorphic venom proteins in long-jawed orb-weaving spiders ( Tetragnatha ) comprise novel gene families

Sequence Determinants of a Conformational Switch in a Protein Structure

Determinants of Gas-Phase Disassembly Behavior in Homodimeric Protein Complexes with Related Yet Divergent Structures

A polymetamorphic protein

Protein salvage and repurposing in evolution: Phospholipase D toxins are stabilized by a remodeled scrap of a membrane association domain

A role for indels in the evolution of Cro protein folds

The Porous Borders of the Protein World

Foldability of a Natural De Novo Evolved Protein

Extreme divergence between one-to-one orthologs: the structure of N15 Cro bound to operator DNA and its relationship to the λ Cro complex

Increased sequence hydrophobicity reduces conformational specificity: A mutational case study of the Arc repressor protein

Variable Substrate Preference among Phospholipase D Toxins from Sicariid Spiders

Multistep mutational transformation of a protein fold through structural intermediates

Evolutionary bridges to new protein folds: design of C-terminal Cro protein chameleon sequences

Relationship between Sequence Determinants of Stability for Two Natural Homologous Proteins with Different Folds

Conservation and diversity in the immunity regions of wild phages with the immunity specificity of phage λ

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