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Detection of novel biomarkers for early detection of Non-Muscle-Invasive Bladder Cancer using Competing Endogenous RNA network analysis

Scientific reports, 2019-06, Vol.9 (1), p.8434, Article 8434

2019

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A multimodal deep learning-based drug repurposing approach for treatment of COVID-19

Molecular diversity, 2021-08, Vol.25 (3), p.1717-1730

2021

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A machine learning method based on the genetic and world competitive contests algorithms for selecting genes or features in biological applications

Scientific reports, 2021-02, Vol.11 (1), p.3349-3349, Article 3349

2021

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Appropriate time to apply control input to complex dynamical systems

Scientific reports, 2020-12, Vol.10 (1), p.22035-22035, Article 22035

2020

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mRNA-miRNA bipartite networks reconstruction in different tissues of bladder cancer based on gene co-expression network analysis

Scientific reports, 2022-04, Vol.12 (1), p.5885-5885, Article 5885

2022

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FeatureSelect: a software for feature selection based on machine learning approaches

BMC bioinformatics, 2019-04, Vol.20 (1), p.170-170, Article 170

2019

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Nodes with the highest control power play an important role at the final level of cooperation in directed networks

Scientific reports, 2021-07, Vol.11 (1), p.13668-13668, Article 13668

2021

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Kavosh: a new algorithm for finding network motifs

BMC bioinformatics, 2009-10, Vol.10 (1), p.318-318, Article 318

2009

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Novel putative drugs and key initiating genes for neurodegenerative disease determined using network‐based genetic integrative analysis

Journal of cellular biochemistry, 2019-04, Vol.120 (4), p.5459-5471

2019

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DeepCDA: deep cross-domain compound–protein affinity prediction through LSTM and convolutional neural networks

Bioinformatics, 2020-11, Vol.36 (17), p.4633-4642

2020

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MODA: An efficient algorithm for network motif discovery in biological networks

Genes & Genetic Systems, 2009, Vol.84(5), pp.385-395

2009

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Predictive genomics: A cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data

Seminars in cancer biology, 2015-02, Vol.30, p.4-12

2015

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Trader as a new optimization algorithm predicts drug-target interactions efficiently

Scientific reports, 2019-06, Vol.9 (1), p.9348-14, Article 9348

2019

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Identification of biomarkers in common chronic lung diseases by co-expression networks and drug-target interactions analysis

Molecular medicine (Cambridge, Mass.), 2020-01, Vol.26 (1), p.9-19, Article 9

2020

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LncRNA and mRNA integration network reconstruction reveals novel key regulators in esophageal squamous-cell carcinoma

Genomics (San Diego, Calif.), 2019-01, Vol.111 (1), p.76-89

2019

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Food co-consumption network as a new approach to dietary pattern in non-alcoholic fatty liver disease

Scientific reports, 2023-11, Vol.13 (1), p.20703-20703, Article 20703

2023

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DrugRep-HeSiaGraph: when heterogenous siamese neural network meets knowledge graphs for drug repurposing

BMC bioinformatics, 2023-10, Vol.24 (1), p.1-374, Article 374

2023

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Genome-scale exploration of transcriptional regulation in the nisin Z producer Lactococcus lactis subsp. lactis IO-1

Scientific reports, 2020-03, Vol.10 (1), p.3787-3787, Article 3787

2020

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A propagation-based seed-centric local community detection for multilayer environment: The case study of colon adenocarcinoma

PloS one, 2021-08, Vol.16 (8), p.e0255718

2021

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Candidate novel long noncoding RNAs, MicroRNAs and putative drugs for Parkinson's disease using a robust and efficient genome-wide association study

Genomics (San Diego, Calif.), 2017-07, Vol.109 (3-4), p.158-164

2017

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Controllability in cancer metabolic networks according to drug targets as driver nodes

PloS one, 2013-11, Vol.8 (11), p.e79397-e79397

2013

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Cancer modeling and network biology: Accelerating toward personalized medicine

Seminars in cancer biology, 2015-02, Vol.30, p.1-3

2015

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Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma

PloS one, 2013-07, Vol.8 (7), p.e67552-e67552

2013

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Distinguishing drug/non-drug-like small molecules in drug discovery using deep belief network

Molecular diversity, 2021-05, Vol.25 (2), p.827-838

2021

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Differential network analysis and protein-protein interaction study reveals active protein modules in glucocorticoid resistance for infant acute lymphoblastic leukemia

Molecular medicine (Cambridge, Mass.), 2019-08, Vol.25 (1), p.36-36, Article 36

2019

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Detection of novel biomarkers for early detection of Non-Muscle-Invasive Bladder Cancer using Competing Endogenous RNA network analysis

A multimodal deep learning-based drug repurposing approach for treatment of COVID-19

A machine learning method based on the genetic and world competitive contests algorithms for selecting genes or features in biological applications

Appropriate time to apply control input to complex dynamical systems

mRNA-miRNA bipartite networks reconstruction in different tissues of bladder cancer based on gene co-expression network analysis

FeatureSelect: a software for feature selection based on machine learning approaches

Nodes with the highest control power play an important role at the final level of cooperation in directed networks

Kavosh: a new algorithm for finding network motifs

Novel putative drugs and key initiating genes for neurodegenerative disease determined using network‐based genetic integrative analysis

DeepCDA: deep cross-domain compound–protein affinity prediction through LSTM and convolutional neural networks

MODA: An efficient algorithm for network motif discovery in biological networks

Predictive genomics: A cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data

Trader as a new optimization algorithm predicts drug-target interactions efficiently

Identification of biomarkers in common chronic lung diseases by co-expression networks and drug-target interactions analysis

LncRNA and mRNA integration network reconstruction reveals novel key regulators in esophageal squamous-cell carcinoma

Food co-consumption network as a new approach to dietary pattern in non-alcoholic fatty liver disease

DrugRep-HeSiaGraph: when heterogenous siamese neural network meets knowledge graphs for drug repurposing

Genome-scale exploration of transcriptional regulation in the nisin Z producer Lactococcus lactis subsp. lactis IO-1

A propagation-based seed-centric local community detection for multilayer environment: The case study of colon adenocarcinoma

Candidate novel long noncoding RNAs, MicroRNAs and putative drugs for Parkinson's disease using a robust and efficient genome-wide association study

Controllability in cancer metabolic networks according to drug targets as driver nodes

Cancer modeling and network biology: Accelerating toward personalized medicine

Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma

Distinguishing drug/non-drug-like small molecules in drug discovery using deep belief network

Differential network analysis and protein-protein interaction study reveals active protein modules in glucocorticoid resistance for infant acute lymphoblastic leukemia

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