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CellDynaMo-stochastic reaction-diffusion-dynamics model: Application to search-and-capture process of mitotic spindle assembly

PLoS computational biology, 2022-06, Vol.18 (6), p.e1010165-e1010165

2022

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Tubulin Bond Energies and Microtubule Biomechanics Determined from Nanoindentation in Silico

Journal of the American Chemical Society, 2014-12, Vol.136 (49), p.17036-17045

2014

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Charge transport in individual short base stacked single-stranded RNA molecules

Scientific reports, 2023-11, Vol.13 (1), p.19858-19858, Article 19858

2023

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Therapeutic phosphorodiamidate morpholino oligonucleotides: Physical properties, solution structures, and folding thermodynamics

Molecular therapy. Nucleic acids, 2023-03, Vol.31, p.631-647

2023

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Structural Transitions and Energy Landscape for Cowpea Chlorotic Mottle Virus Capsid Mechanics from Nanomanipulation in Vitro and in Silico

Biophysical journal, 2013-10, Vol.105 (8), p.1893-1903

2013

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Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles

PLoS computational biology, 2016-01, Vol.12 (1), p.e1004729-e1004729

2016

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Quartz Crystal Microbalance: A Useful Tool for Studying Thin Polymer Films and Complex Biomolecular Systems at the Solution−Surface Interface

Biomacromolecules, 2003-09, Vol.4 (5), p.1099-1120

Marx, Kenneth A

2003

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Microtubule assembly and disassembly dynamics model: Exploring dynamic instability and identifying features of Microtubules’ Growth, Catastrophe, Shortening, and Rescue

Computational and structural biotechnology journal, 2022-01, Vol.20, p.953-974

2022

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Multi-tissue microarray analysis identifies a molecular signature of regeneration

PloS one, 2012-12, Vol.7 (12), p.e52375-e52375

2012

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Strength, deformability and toughness of uncrosslinked fibrin fibers from theoretical reconstruction of stress-strain curves

Acta biomaterialia, 2021-12, Vol.136, p.327-342

2021

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Interrelated effects of chromosome size, mechanics, number, location-orientation and polar ejection force on the spindle accuracy: a 3D computational study

Molecular biology of the cell, 2023-05, Vol.34 (6), p.ar57-ar57

2023

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Mechanical fatigue testing in silico: Dynamic evolution of material properties of nanoscale biological particles

Acta biomaterialia, 2023-08, Vol.166, p.326-345

2023

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Applications of Machine Learning and High-Dimensional Visualization in Cancer Detection, Diagnosis, and Management

Annals of the New York Academy of Sciences, 2004-05, Vol.1020 (1), p.239-262

2004

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A living cell quartz crystal microbalance biosensor for continuous monitoring of cytotoxic responses of macrophages to single-walled carbon nanotubes

Particle and fibre toxicology, 2011-01, Vol.8 (1), p.4-4, Article 4

2011

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Botulinum Endopeptidase: SAXS Experiments and MD Simulations Reveal Extended Solution Structures That Account for Its Biochemical Properties

The journal of physical chemistry. B, 2020-07, Vol.124 (28), p.5801-5812

2020

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Regulatory element in fibrin triggers tension-activated transition from catch to slip bonds

Proceedings of the National Academy of Sciences - PNAS, 2018-08, Vol.115 (34), p.8575-8580

2018

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TensorCalculator: exploring the evolution of mechanical stress in the CCMV capsid

Journal of Physics: Condensed Matter, 2018-01, Vol.30 (4), p.044006-044006

2018

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Dynamic Transition from α‑Helices to β‑Sheets in Polypeptide Coiled-Coil Motifs

Journal of the American Chemical Society, 2017-11, Vol.139 (45), p.16168-16177

2017

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SOP-GPU: influence of solvent-induced hydrodynamic interactions on dynamic structural transitions in protein assemblies

Journal of computational chemistry, 2016-06, Vol.37 (17), p.1537-1551

2016

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Dynamic cell adhesion and viscoelastic signatures distinguish normal from malignant human mammary cells using quartz crystal microbalance

Analytical biochemistry, 2012-02, Vol.421 (1), p.164-171

2012

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Detection of apoptosis and drug resistance of human breast cancer cells to taxane treatments using quartz crystal microbalance biosensor technology

Assay and drug development technologies, 2005-02, Vol.3 (1), p.77-88

2005

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Fluctuating nonlinear spring theory: Strength, deformability, and toughness of biological nanoparticles from theoretical reconstruction of force-deformation spectra

Acta biomaterialia, 2021-03, Vol.122, p.263-277

2021

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Vectorized Radviz and Its Application to Multiple Cluster Datasets

IEEE transactions on visualization and computer graphics, 2008-11, Vol.14 (6), p.1444-1427

2008

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A comparative study of the cytoskeleton binding drugs nocodazole and taxol with a mammalian cell quartz crystal microbalance biosensor: Different dynamic responses and energy dissipation effects

Analytical biochemistry, 2007-02, Vol.361 (1), p.77-92

2007

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Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition

BMC genomics, 2004-12, Vol.5 (1), p.95-95, Article 95

2004

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CellDynaMo-stochastic reaction-diffusion-dynamics model: Application to search-and-capture process of mitotic spindle assembly

Tubulin Bond Energies and Microtubule Biomechanics Determined from Nanoindentation in Silico

Charge transport in individual short base stacked single-stranded RNA molecules

Therapeutic phosphorodiamidate morpholino oligonucleotides: Physical properties, solution structures, and folding thermodynamics

Structural Transitions and Energy Landscape for Cowpea Chlorotic Mottle Virus Capsid Mechanics from Nanomanipulation in Vitro and in Silico

Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles

Quartz Crystal Microbalance: A Useful Tool for Studying Thin Polymer Films and Complex Biomolecular Systems at the Solution−Surface Interface

Microtubule assembly and disassembly dynamics model: Exploring dynamic instability and identifying features of Microtubules’ Growth, Catastrophe, Shortening, and Rescue

Multi-tissue microarray analysis identifies a molecular signature of regeneration

Strength, deformability and toughness of uncrosslinked fibrin fibers from theoretical reconstruction of stress-strain curves

Interrelated effects of chromosome size, mechanics, number, location-orientation and polar ejection force on the spindle accuracy: a 3D computational study

Mechanical fatigue testing in silico: Dynamic evolution of material properties of nanoscale biological particles

Applications of Machine Learning and High-Dimensional Visualization in Cancer Detection, Diagnosis, and Management

A living cell quartz crystal microbalance biosensor for continuous monitoring of cytotoxic responses of macrophages to single-walled carbon nanotubes

Botulinum Endopeptidase: SAXS Experiments and MD Simulations Reveal Extended Solution Structures That Account for Its Biochemical Properties

Regulatory element in fibrin triggers tension-activated transition from catch to slip bonds

TensorCalculator: exploring the evolution of mechanical stress in the CCMV capsid

Dynamic Transition from α‑Helices to β‑Sheets in Polypeptide Coiled-Coil Motifs

SOP-GPU: influence of solvent-induced hydrodynamic interactions on dynamic structural transitions in protein assemblies

Dynamic cell adhesion and viscoelastic signatures distinguish normal from malignant human mammary cells using quartz crystal microbalance

Detection of apoptosis and drug resistance of human breast cancer cells to taxane treatments using quartz crystal microbalance biosensor technology

Fluctuating nonlinear spring theory: Strength, deformability, and toughness of biological nanoparticles from theoretical reconstruction of force-deformation spectra

Vectorized Radviz and Its Application to Multiple Cluster Datasets

A comparative study of the cytoskeleton binding drugs nocodazole and taxol with a mammalian cell quartz crystal microbalance biosensor: Different dynamic responses and energy dissipation effects

Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition

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