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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Nature biotechnology, 2014-03, Vol.32 (3), p.223-226

2014

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Shared and Distinctive Neighborhoods of Emerin and Lamin B Receptor Revealed by Proximity Labeling and Quantitative Proteomics

Journal of proteome research, 2022-09, Vol.21 (9), p.2197-2210

2022

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Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells

Nucleus (Austin, Tex.), 2019-01, Vol.10 (1), p.126-143

2019

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Gel Electrophoresis Markup Language (GelML) from the Proteomics Standards Initiative

Proteomics (Weinheim), 2010-09, Vol.10 (17), p.3073-3081

2010

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From Proteomics Data Representation to Public Data Flow: A Report on the HUPO-PSI Workshop September 2011, Geneva, Switzerland

Proteomics (Weinheim), 2012-02, Vol.12 (3), p.351-355

2012

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Protein Footprinting via Covalent Protein Painting Reveals Structural Changes of the Proteome in Alzheimer’s Disease

Journal of proteome research, 2021-05, Vol.20 (5), p.2762-2771

2021

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Impact of the Identification Strategy on the Reproducibility of the DDA and DIA Results

Journal of proteome research, 2020-08, Vol.19 (8), p.3153-3161

2020

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The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics

Molecular & cellular proteomics, 2017-07, Vol.16 (7), p.1275-1285

2017

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Comparative membrane proteomics reveals diverse cell regulators concentrated at the nuclear envelope

Life science alliance, 2023-09, Vol.6 (9), p.e202301998

2023

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DeGlyPHER: An Ultrasensitive Method for the Analysis of Viral Spike N‑Glycoforms

Analytical chemistry (Washington), 2021-10, Vol.93 (40), p.13651-13657

2021

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Pulsed Azidohomoalanine Labeling in Mammals (PALM) Detects Changes in Liver-Specific LKB1 Knockout Mice

Journal of proteome research, 2015-11, Vol.14 (11), p.4815-4822

2015

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Temporal Quantitative Profiling of Newly Synthesized Proteins during Aβ Accumulation

Journal of proteome research, 2021-01, Vol.20 (1), p.763-775

2021

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Improving Proteomics Data Reproducibility with a Dual-Search Strategy

Analytical chemistry (Washington), 2020-01, Vol.92 (2), p.1697-1701

2020

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Altered network and rescue of human neurons derived from individuals with early-onset genetic epilepsy

Molecular psychiatry, 2021-11, Vol.26 (11), p.7047-7068

2021

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Deducing the presence of proteins and proteoforms in quantitative proteomics

Nature communications, 2018-06, Vol.9 (1), p.2320-12, Article 2320

2018

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Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results

Journal of proteome research, 2019-08, Vol.18 (8), p.2999-3008

2019

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The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative

Methods in molecular biology (Clifton, N.J.), 2014-01, Vol.1072, p.765

2014

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δF508 CFTR interactome remodelling promotes rescue of cystic fibrosis

Nature (London), 2015-12, Vol.528 (7583), p.510-516

2015

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PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets

Journal of proteome research, 2018-04, Vol.17 (4), p.1547-1558

2018

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Understanding molecular mechanisms of disease through spatial proteomics

Current opinion in chemical biology, 2019-02, Vol.48, p.19-25

2019

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A standardized framing for reporting protein identifications in mzIdentML 1.2

Proteomics (Weinheim), 2014-11, Vol.14 (21-22), p.2389-2399

2014

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Structural Analysis of Hippocampal Kinase Signal Transduction

ACS chemical neuroscience, 2018-12, Vol.9 (12), p.3072-3085

2018

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Multicenter experiment for quality control of peptide-centric LC–MS/MS analysis — A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers

Journal of proteomics, 2015-09, Vol.127 (Pt B), p.264-274

2015

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Interactome analysis illustrates diverse gene regulatory processes associated with LIN28A in human iPS cell-derived neural progenitor cells

iScience, 2021-11, Vol.24 (11), p.103321-103321, Article 103321

2021

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Analysis of the Tropism of SARS-CoV-2 Based on the Host Interactome of the Spike Protein

Journal of proteome research, 2023-12, Vol.22 (12), p.3742-3753

2023

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Shared and Distinctive Neighborhoods of Emerin and Lamin B Receptor Revealed by Proximity Labeling and Quantitative Proteomics

Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells

Gel Electrophoresis Markup Language (GelML) from the Proteomics Standards Initiative

From Proteomics Data Representation to Public Data Flow: A Report on the HUPO-PSI Workshop September 2011, Geneva, Switzerland

Protein Footprinting via Covalent Protein Painting Reveals Structural Changes of the Proteome in Alzheimer’s Disease

Impact of the Identification Strategy on the Reproducibility of the DDA and DIA Results

The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics

Comparative membrane proteomics reveals diverse cell regulators concentrated at the nuclear envelope

DeGlyPHER: An Ultrasensitive Method for the Analysis of Viral Spike N‑Glycoforms

Pulsed Azidohomoalanine Labeling in Mammals (PALM) Detects Changes in Liver-Specific LKB1 Knockout Mice

Temporal Quantitative Profiling of Newly Synthesized Proteins during Aβ Accumulation

Improving Proteomics Data Reproducibility with a Dual-Search Strategy

Altered network and rescue of human neurons derived from individuals with early-onset genetic epilepsy

Deducing the presence of proteins and proteoforms in quantitative proteomics

Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results

The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative

δF508 CFTR interactome remodelling promotes rescue of cystic fibrosis

PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets

Understanding molecular mechanisms of disease through spatial proteomics

A standardized framing for reporting protein identifications in mzIdentML 1.2

Structural Analysis of Hippocampal Kinase Signal Transduction

Multicenter experiment for quality control of peptide-centric LC–MS/MS analysis — A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers

Interactome analysis illustrates diverse gene regulatory processes associated with LIN28A in human iPS cell-derived neural progenitor cells

Analysis of the Tropism of SARS-CoV-2 Based on the Host Interactome of the Spike Protein

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