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BIGSdb: Scalable analysis of bacterial genome variation at the population level

BMC bioinformatics, 2010-12, Vol.11 (1), p.595-595, Article 595

2010

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Sex and virulence in Escherichia coli: an evolutionary perspective

Molecular microbiology, 2006-06, Vol.60 (5), p.1136-1151

2006

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A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter

PloS one, 2014-03, Vol.9 (3), p.e92798-e92798

2014

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Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

Microbiology (Society for General Microbiology), 2012-04, Vol.158 (4), p.1005-1015

2012

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Multilocus Sequence Typing System for the Endosymbiont Wolbachia pipientis

Applied and Environmental Microbiology, 2006-11, Vol.72 (11), p.7098-7110

2006

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Meningococcal carriage and disease—Population biology and evolution

Vaccine, 2009-06, Vol.27 (4), p.B64-B70

2009

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A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies

Nature communications, 2022-07, Vol.13 (1), p.3807-3807, Article 3807

2022

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Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

Nature communications, 2018-11, Vol.9 (1), p.5034-11, Article 5034

2018

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Campylobacter Genotyping to Determine the Source of Human Infection

Clinical infectious diseases, 2009-04, Vol.48 (8), p.1072-1078

2009

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Cryptic ecology among host generalist Campylobacter jejuni in domestic animals

Molecular ecology, 2014-05, Vol.23 (10), p.2442-2451

2014

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Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models

PLoS computational biology, 2017-07, Vol.13 (7), p.e1005652-e1005652

2017

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Multi locus sequence typing of Chlamydia reveals an association between Chlamydia psittaci genotypes and host species

PloS one, 2010-12, Vol.5 (12), p.e14179-e14179

2010

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A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria

Microbiology (Society for General Microbiology), 2012-06, Vol.158 (Pt 6), p.1570-1580

2012

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Gut microbiota of the critically endangered Saiga antelope across two wild populations in a year without mass mortality

Scientific reports, 2023-10, Vol.13 (1), p.17236-17236, Article 17236

2023

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Progressive genome-wide introgression in agricultural Campylobacter coli

Molecular ecology, 2013-02, Vol.22 (4), p.1051-1064

2013

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Distribution of class 1 integrons in historic and contemporary collections of human pathogenic Escherichia coli

PloS one, 2020-06, Vol.15 (6), p.e0233315-e0233315

2020

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Candida orthopsilosis and Candida metapsilosis spp. nov. To Replace Candida parapsilosis Groups II and III

Journal of Clinical Microbiology, 2005, Vol.43 (1), p.284-292

2005

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Convergence of Campylobacter Species: Implications for Bacterial Evolution

Science (American Association for the Advancement of Science), 2008-04, Vol.320 (5873), p.237-239

2008

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Profiling IgG and IgA antibody responses during vaccination and infection in a high-risk gonorrhoea population

Nature communications, 2024-08, Vol.15 (1), p.6712-17, Article 6712

2024

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Characterization of meningococcal carriage isolates from Greece by whole genome sequencing: Implications for 4CMenB vaccine implementation

PloS one, 2018-12, Vol.13 (12), p.e0209919-e0209919

2018

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Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis

PLoS pathogens, 2021-10, Vol.17 (10), p.e1009992-e1009992

2021

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Real-Time Genomic Epidemiological Evaluation of Human Campylobacter Isolates by Use of Whole-Genome Multilocus Sequence Typing

Journal of Clinical Microbiology, 2013-08, Vol.51 (8), p.2526-2534

2013

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Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species

Molecular ecology, 2011-08, Vol.20 (16), p.3484-3490

2011

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Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications

Wellcome open research, 2018, Vol.3, p.124-124

2018

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BIGSdb: Scalable analysis of bacterial genome variation at the population level

Sex and virulence in Escherichia coli: an evolutionary perspective

A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

Multilocus Sequence Typing System for the Endosymbiont Wolbachia pipientis

Meningococcal carriage and disease—Population biology and evolution

A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

Campylobacter Genotyping to Determine the Source of Human Infection

Cryptic ecology among host generalist Campylobacter jejuni in domestic animals

Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models

Multi locus sequence typing of Chlamydia reveals an association between Chlamydia psittaci genotypes and host species

A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria

Gut microbiota of the critically endangered Saiga antelope across two wild populations in a year without mass mortality

Progressive genome-wide introgression in agricultural Campylobacter coli

Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter

Distribution of class 1 integrons in historic and contemporary collections of human pathogenic Escherichia coli

Candida orthopsilosis and Candida metapsilosis spp. nov. To Replace Candida parapsilosis Groups II and III

Convergence of Campylobacter Species: Implications for Bacterial Evolution

Profiling IgG and IgA antibody responses during vaccination and infection in a high-risk gonorrhoea population

Characterization of meningococcal carriage isolates from Greece by whole genome sequencing: Implications for 4CMenB vaccine implementation

Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis

Real-Time Genomic Epidemiological Evaluation of Human Campylobacter Isolates by Use of Whole-Genome Multilocus Sequence Typing

Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species

Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications

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