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ESpritz: accurate and fast prediction of protein disorder

Bioinformatics, 2012-02, Vol.28 (4), p.503-509

2012

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MobiDB: a comprehensive database of intrinsic protein disorder annotations

Bioinformatics, 2012-08, Vol.28 (15), p.2080-2081

2012

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NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation

BMC genomics, 2014, Vol.15 Suppl 4 (S4), p.S7-S7, Article S7

2014

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Graphlet Based Metrics for the Comparison of Gene Regulatory Networks

PloS one, 2016-10, Vol.11 (10), p.e0163497-e0163497

2016

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Transcriptional Signatures and Network-Based Approaches Identified Master Regulators Transcription Factors Involved in Experimental Periodontitis Pathogenesis

International journal of molecular sciences, 2023-10, Vol.24 (19), p.14835

2023

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First metagenomic analysis of the Andean condor ( Vultur gryphus ) gut microbiome reveals microbial diversity and wide resistome

PeerJ (San Francisco, CA), 2023-07, Vol.11, p.e15235-e15235, Article e15235

2023

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RING: networking interacting residues, evolutionary information and energetics in protein structures

Bioinformatics, 2011-07, Vol.27 (14), p.2003-2005

2011

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Inhibition of bacterial quorum sensing by extracts from aquatic fungi: first report from marine endophytes

Marine drugs, 2014-11, Vol.12 (11), p.5503-5526

2014

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Fly cryptochrome and the visual system

Proceedings of the National Academy of Sciences - PNAS, 2013-04, Vol.110 (15), p.6163-6168

2013

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Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information

BMC bioinformatics, 2007-06, Vol.8 (1), p.201-201, Article 201

2007

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An integrated molecular dynamics, principal component analysis and residue interaction network approach reveals the impact of M184V mutation on HIV reverse transcriptase resistance to lamivudine

Molecular bioSystems, 2014-01, Vol.10 (8), p.2215-2228

2014

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GPR43 stimulation on TCRαβ + intraepithelial colonic lymphocytes inhibits the recruitment of encephalitogenic T-cells into the central nervous system and attenuates the development of autoimmunity

Journal of neuroinflammation, 2023-06, Vol.20 (1), p.135-135, Article 135

2023

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Comparative Genomics of Clostridium baratii Reveals Strain-Level Diversity in Toxin Abundance

Microorganisms (Basel), 2022-01, Vol.10 (2), p.213

2022

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Transcriptional and Histone Acetylation Changes Associated with CRE Elements Expose Key Factors Governing the Regulatory Circuit in the Early Stage of Huntington's Disease Models

International journal of molecular sciences, 2023-06, Vol.24 (13), p.10848

2023

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Transcriptional profiling of embryos lacking the lipoprotein receptor SR-B1 reveals a regulatory circuit governing a neurodevelopmental or metabolic decision during neural tube closure

BMC genomics, 2018-10, Vol.19 (1), p.731-731, Article 731

2018

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Oxasqualenoids from Laurencia viridis: Combined Spectroscopic–Computational Analysis and Antifouling Potential

Journal of natural products (Washington, D.C.), 2015-04, Vol.78 (4), p.712-721

2015

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Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes

Frontiers in microbiology, 2022-07, Vol.13, p.923105-923105

2022

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Intermittent Control as a Model of Mouse Movements

ACM transactions on computer-human interaction, 2021-10, Vol.28 (5), p.1-46, Article 1

2021

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Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

Frontiers in genetics, 2023-08, Vol.14, p.1209416-1209416

2023

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Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing

Microbiology spectrum, 2021-10, Vol.9 (2), p.e0101821-e0101821

2021

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RIP-MD: a tool to study residue interaction networks in protein molecular dynamics

PeerJ (San Francisco, CA), 2018-12, Vol.6, p.e5998, Article e5998

2018

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Correction for Silva-Andrade et al., "Using metabolic networks to predict cross-feeding and competition interactions between microorganisms"

Microbiology spectrum, 2024-10, Vol.12 (10), p.e0189924

2024

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Editorial: Systems modeling: Approaches and applications–Volume II

Frontiers in molecular biosciences, 2022-10, Vol.9, p.1048727-1048727

2022

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Using metabolic networks to predict cross-feeding and competition interactions between microorganisms

Microbiology spectrum, 2024-05, Vol.12 (5), p.e0228723

2024

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Corrigendum: Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

Frontiers in genetics, 2023-09, Vol.14, p.1286081-1286081

2023

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ESpritz: accurate and fast prediction of protein disorder

MobiDB: a comprehensive database of intrinsic protein disorder annotations

NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation

Graphlet Based Metrics for the Comparison of Gene Regulatory Networks

Transcriptional Signatures and Network-Based Approaches Identified Master Regulators Transcription Factors Involved in Experimental Periodontitis Pathogenesis

First metagenomic analysis of the Andean condor ( Vultur gryphus ) gut microbiome reveals microbial diversity and wide resistome

RING: networking interacting residues, evolutionary information and energetics in protein structures

Inhibition of bacterial quorum sensing by extracts from aquatic fungi: first report from marine endophytes

Fly cryptochrome and the visual system

Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information

An integrated molecular dynamics, principal component analysis and residue interaction network approach reveals the impact of M184V mutation on HIV reverse transcriptase resistance to lamivudine

GPR43 stimulation on TCRαβ + intraepithelial colonic lymphocytes inhibits the recruitment of encephalitogenic T-cells into the central nervous system and attenuates the development of autoimmunity

Comparative Genomics of Clostridium baratii Reveals Strain-Level Diversity in Toxin Abundance

Transcriptional and Histone Acetylation Changes Associated with CRE Elements Expose Key Factors Governing the Regulatory Circuit in the Early Stage of Huntington's Disease Models

Transcriptional profiling of embryos lacking the lipoprotein receptor SR-B1 reveals a regulatory circuit governing a neurodevelopmental or metabolic decision during neural tube closure

Oxasqualenoids from Laurencia viridis: Combined Spectroscopic–Computational Analysis and Antifouling Potential

Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes

Intermittent Control as a Model of Mouse Movements

Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing

RIP-MD: a tool to study residue interaction networks in protein molecular dynamics

Correction for Silva-Andrade et al., "Using metabolic networks to predict cross-feeding and competition interactions between microorganisms"

Editorial: Systems modeling: Approaches and applications–Volume II

Using metabolic networks to predict cross-feeding and competition interactions between microorganisms

Corrigendum: Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

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