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DeepLC can predict retention times for peptides that carry as-yet unseen modifications

Nature methods, 2021-11, Vol.18 (11), p.1363-1369

2021

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LNCipedia 5: towards a reference set of human long non-coding RNAs

Nucleic acids research, 2019-01, Vol.47 (D1), p.D135-D139

2019

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The RNA landscape of the human placenta in health and disease

Nature communications, 2021-05, Vol.12 (1), p.2639-2639, Article 2639

2021

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Foldscope: origami-based paper microscope

PloS one, 2014-06, Vol.9 (6), p.e98781-e98781

2014

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LNCipedia: a database for annotated human lncRNA transcript sequences and structures

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D246-D251

2013

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Improved visualization of protein consensus sequences by iceLogo

Nature methods, 2009-11, Vol.6 (11), p.786-787

2009

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PeptideShaker enables reanalysis of MS-derived proteomics data sets

Nature biotechnology, 2015-01, Vol.33 (1), p.22-24

2015

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sORFs.org: a repository of small ORFs identified by ribosome profiling

Nucleic acids research, 2016-01, Vol.44 (D1), p.D324-D329

2016

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SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches

Proteomics (Weinheim), 2011-03, Vol.11 (5), p.996-999

2011

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The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways

Blood, 2012-10, Vol.120 (15), p.e73-e82

2012

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SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

Genome research, 2018-03, Vol.28 (3), p.396-411

2018

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Nature biotechnology, 2014-03, Vol.32 (3), p.223-226

2014

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About dice, bouldering, and team empowerment: running the CompOmics group at VIB and Ghent University, Belgium

PLoS computational biology, 2013-11, Vol.9 (11), p.e1003332-e1003332

2013

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An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes

Nature protocols, 2015-01, Vol.10 (1), p.169-187

2015

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Unipept 4.0: Functional Analysis of Metaproteome Data

Journal of proteome research, 2019-02, Vol.18 (2), p.606-615

2019

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Analysis of lipid experiments (ALEX): a software framework for analysis of high-resolution shotgun lipidomics data

PloS one, 2013-11, Vol.8 (11), p.e79736-e79736

2013

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N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana

Molecular & cellular proteomics, 2017-06, Vol.16 (6), p.1064-1080

2017

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Comparative Analysis of Label-Free and 8-Plex iTRAQ Approach for Quantitative Tissue Proteomic Analysis

PloS one, 2015-09, Vol.10 (9), p.e0137048-e0137048

2015

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Streamlined, Inexpensive 3D Printing of the Brain and Skull

PloS one, 2015-08, Vol.10 (8), p.e0136198-e0136198

2015

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Segmentation of the Clustered Cells with Optimized Boundary Detection in Negative Phase Contrast Images

PloS one, 2015-06, Vol.10 (6), p.e0130178-e0130178

2015

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lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation

Nature communications, 2023-10, Vol.14 (1), p.6743-6743, Article 6743

2023

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Orthogonal proteomics methods to unravel the HOTAIR interactome

Scientific reports, 2022-01, Vol.12 (1), p.1513-11, Article 1513

2022

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Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics

EuPA open proteomics, 2016-06, Vol.11 (C), p.42-44

Martens, Lennart

2016

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Evaluating the impact of different sequence databases on metaproteome analysis: insights from a lab-assembled microbial mixture

PloS one, 2013-12, Vol.8 (12), p.e82981-e82981

2013

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Peptide and protein quantification: A map of the minefield

Proteomics (Weinheim), 2010-02, Vol.10 (4), p.650-670

2010

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DeepLC can predict retention times for peptides that carry as-yet unseen modifications

LNCipedia 5: towards a reference set of human long non-coding RNAs

The RNA landscape of the human placenta in health and disease

Foldscope: origami-based paper microscope

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

Improved visualization of protein consensus sequences by iceLogo

PeptideShaker enables reanalysis of MS-derived proteomics data sets

sORFs.org: a repository of small ORFs identified by ribosome profiling

SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches

The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

About dice, bouldering, and team empowerment: running the CompOmics group at VIB and Ghent University, Belgium

An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes

Unipept 4.0: Functional Analysis of Metaproteome Data

Analysis of lipid experiments (ALEX): a software framework for analysis of high-resolution shotgun lipidomics data

N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana

Comparative Analysis of Label-Free and 8-Plex iTRAQ Approach for Quantitative Tissue Proteomic Analysis

Streamlined, Inexpensive 3D Printing of the Brain and Skull

Segmentation of the Clustered Cells with Optimized Boundary Detection in Negative Phase Contrast Images

lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation

Orthogonal proteomics methods to unravel the HOTAIR interactome

Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics

Evaluating the impact of different sequence databases on metaproteome analysis: insights from a lab-assembled microbial mixture

Peptide and protein quantification: A map of the minefield

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