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Protein Footprinting via Covalent Protein Painting Reveals Structural Changes of the Proteome in Alzheimer’s Disease

Journal of proteome research, 2021-05, Vol.20 (5), p.2762-2771

2021

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Impact of the Identification Strategy on the Reproducibility of the DDA and DIA Results

Journal of proteome research, 2020-08, Vol.19 (8), p.3153-3161

2020

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The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics

Molecular & cellular proteomics, 2017-07, Vol.16 (7), p.1275-1285

2017

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DeGlyPHER: An Ultrasensitive Method for the Analysis of Viral Spike N‑Glycoforms

Analytical chemistry (Washington), 2021-10, Vol.93 (40), p.13651-13657

2021

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Pulsed Azidohomoalanine Labeling in Mammals (PALM) Detects Changes in Liver-Specific LKB1 Knockout Mice

Journal of proteome research, 2015-11, Vol.14 (11), p.4815-4822

2015

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Temporal Quantitative Profiling of Newly Synthesized Proteins during Aβ Accumulation

Journal of proteome research, 2021-01, Vol.20 (1), p.763-775

2021

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Improving Proteomics Data Reproducibility with a Dual-Search Strategy

Analytical chemistry (Washington), 2020-01, Vol.92 (2), p.1697-1701

2020

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Deducing the presence of proteins and proteoforms in quantitative proteomics

Nature communications, 2018-06, Vol.9 (1), p.2320-12, Article 2320

2018

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Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results

Journal of proteome research, 2019-08, Vol.18 (8), p.2999-3008

2019

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The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative

Methods in molecular biology (Clifton, N.J.), 2014-01, Vol.1072, p.765

2014

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δF508 CFTR interactome remodelling promotes rescue of cystic fibrosis

Nature (London), 2015-12, Vol.528 (7583), p.510-516

2015

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PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets

Journal of proteome research, 2018-04, Vol.17 (4), p.1547-1558

2018

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A standardized framing for reporting protein identifications in mzIdentML 1.2

Proteomics (Weinheim), 2014-11, Vol.14 (21-22), p.2389-2399

2014

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Understanding molecular mechanisms of disease through spatial proteomics

Current opinion in chemical biology, 2019-02, Vol.48, p.19-25

2019

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Structural Analysis of Hippocampal Kinase Signal Transduction

ACS chemical neuroscience, 2018-12, Vol.9 (12), p.3072-3085

2018

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Multicenter experiment for quality control of peptide-centric LC–MS/MS analysis — A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers

Journal of proteomics, 2015-09, Vol.127 (Pt B), p.264-274

2015

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Interactome analysis illustrates diverse gene regulatory processes associated with LIN28A in human iPS cell-derived neural progenitor cells

iScience, 2021-11, Vol.24 (11), p.103321-103321, Article 103321

2021

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Analysis of the Tropism of SARS-CoV-2 Based on the Host Interactome of the Spike Protein

Journal of proteome research, 2023-12, Vol.22 (12), p.3742-3753

2023

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The ProteoRed MIAPE web toolkit: A User-friendly Framework to Connect and Share Proteomics Standards

Molecular & cellular proteomics, 2011-10, Vol.10 (10), p.M111.008334-M111.008334, Article M111.008334

2011

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Quantitative analysis of global protein stability rates in tissues

Scientific reports, 2020-09, Vol.10 (1), p.15983-15983, Article 15983

2020

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Nature biotechnology, 2014-03, Vol.32 (3), p.223-226

2014

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Quantitative Proteomics of Human Fibroblasts with I1061T Mutation in Niemann–Pick C1 (NPC1) Protein Provides Insights into the Disease Pathogenesis[S]

Molecular & cellular proteomics, 2015-07, Vol.14 (7), p.1734-1749

2015

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Semi-automatic tool to describe, store and compare proteomics experiments based on MIAPE compliant reports

Proteomics (Weinheim), 2010-03, Vol.10 (6), p.1256-1260

2010

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Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome

Journal of proteome research, 2019-10, Vol.18 (10), p.3703-3714

2019

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Tools (Viewer, Library and Validator) that Facilitate Use of the Peptide and Protein Identification Standard Format, Termed mzIdentML

Molecular & cellular proteomics, 2013-11, Vol.12 (11), p.3026-3035

2013

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Protein Footprinting via Covalent Protein Painting Reveals Structural Changes of the Proteome in Alzheimer’s Disease

Impact of the Identification Strategy on the Reproducibility of the DDA and DIA Results

The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics

DeGlyPHER: An Ultrasensitive Method for the Analysis of Viral Spike N‑Glycoforms

Pulsed Azidohomoalanine Labeling in Mammals (PALM) Detects Changes in Liver-Specific LKB1 Knockout Mice

Temporal Quantitative Profiling of Newly Synthesized Proteins during Aβ Accumulation

Improving Proteomics Data Reproducibility with a Dual-Search Strategy

Deducing the presence of proteins and proteoforms in quantitative proteomics

Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results

The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative

δF508 CFTR interactome remodelling promotes rescue of cystic fibrosis

PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets

A standardized framing for reporting protein identifications in mzIdentML 1.2

Understanding molecular mechanisms of disease through spatial proteomics

Structural Analysis of Hippocampal Kinase Signal Transduction

Multicenter experiment for quality control of peptide-centric LC–MS/MS analysis — A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers

Interactome analysis illustrates diverse gene regulatory processes associated with LIN28A in human iPS cell-derived neural progenitor cells

Analysis of the Tropism of SARS-CoV-2 Based on the Host Interactome of the Spike Protein

The ProteoRed MIAPE web toolkit: A User-friendly Framework to Connect and Share Proteomics Standards

Quantitative analysis of global protein stability rates in tissues

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Quantitative Proteomics of Human Fibroblasts with I1061T Mutation in Niemann–Pick C1 (NPC1) Protein Provides Insights into the Disease Pathogenesis[S]

Semi-automatic tool to describe, store and compare proteomics experiments based on MIAPE compliant reports

Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome

Tools (Viewer, Library and Validator) that Facilitate Use of the Peptide and Protein Identification Standard Format, Termed mzIdentML

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