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The evolutionary significance of polyploidy

Nature reviews. Genetics, 2017-07, Vol.18 (7), p.411-424

2017

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Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense

The New phytologist, 2014-02, Vol.201 (3), p.850-861

2014

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Low immunogenicity of common cancer hot spot mutations resulting in false immunogenic selection signals

PLoS genetics, 2021-02, Vol.17 (2), p.e1009368-e1009368

2021

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Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

BMC genomics, 2023-05, Vol.24 (1), p.247-247, Article 247

2023

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Adaptation to High Ethanol Reveals Complex Evolutionary Pathways

PLoS genetics, 2015-11, Vol.11 (11), p.e1005635-e1005635

2015

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Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways

Cell reports (Cambridge), 2015-02, Vol.10 (5), p.711-725

2015

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Effect of genomic distance on coexpression of coregulated genes in E. coli

PloS one, 2017-04, Vol.12 (4), p.e0174887-e0174887

2017

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Photoreceptor-Mediated Bending towards UV-B in Arabidopsis

Molecular plant, 2014-06, Vol.7 (6), p.1041-1052

2014

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Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii

BMC biology, 2023-11, Vol.21 (1), p.1-244, Article 244

2023

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Network-Based Identification of Adaptive Pathways in Evolved Ethanol-Tolerant Bacterial Populations

Molecular biology and evolution, 2017-11, Vol.34 (11), p.2927-2943

2017

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Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes

BMC genomics, 2021-06, Vol.22 (1), p.1-465, Article 465

2021

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Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Scientific reports, 2023-11, Vol.13 (1), p.19656-19656, Article 19656

2023

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SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms

BMC bioinformatics, 2006-01, Vol.7 (1), p.43-43, Article 43

2006

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Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i

PloS one, 2018-02, Vol.13 (2), p.e0192504-e0192504

2018

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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Frontiers in microbiology, 2024-03, Vol.15, p.1330814-1330814

2024

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Dynamic partitioning of search patterns for approximate pattern matching using search schemes

iScience, 2021-07, Vol.24 (7), p.102687-102687, Article 102687

2021

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Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

Frontiers in microbiology, 2021-11, Vol.12, p.738284-738284

2021

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Image-Based Dynamic Phenotyping Reveals Genetic Determinants of Filamentation-Mediated β-Lactam Tolerance

Frontiers in microbiology, 2020-03, Vol.11, p.374-374

2020

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Advantages and limitations of current network inference methods

Nature reviews. Microbiology, 2010-10, Vol.8 (10), p.717-729

2010

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Using ribosomal protein genes as reference: a tale of caution

PloS one, 2008-03, Vol.3 (3), p.e1854-e1854

2008

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Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks

Frontiers in microbiology, 2021-11, Vol.12, p.750278-750278

2021

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Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Frontiers in microbiology, 2023-07, Vol.14, p.1204630-1204630

2023

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Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study

International journal of molecular sciences, 2020-08, Vol.21 (16), p.5688

2020

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Associating expression and genomic data using co-occurrence measures

Biology direct, 2019-05, Vol.14 (1), p.10-10, Article 10

2019

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The evolutionary significance of polyploidy

Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense

Low immunogenicity of common cancer hot spot mutations resulting in false immunogenic selection signals

Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

Adaptation to High Ethanol Reveals Complex Evolutionary Pathways

Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways

Effect of genomic distance on coexpression of coregulated genes in E. coli

Photoreceptor-Mediated Bending towards UV-B in Arabidopsis

Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii

Network-Based Identification of Adaptive Pathways in Evolved Ethanol-Tolerant Bacterial Populations

Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Dynamic partitioning of search patterns for approximate pattern matching using search schemes

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

Image-Based Dynamic Phenotyping Reveals Genetic Determinants of Filamentation-Mediated β-Lactam Tolerance

Advantages and limitations of current network inference methods

The Crabtree Effect Shapes the Saccharomyces cerevisiae Lag Phase during the Switch between Different Carbon Sources

Using ribosomal protein genes as reference: a tale of caution

Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study

Associating expression and genomic data using co-occurrence measures

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