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Long non-coding RNAs as a source of new peptides

eLife, 2014-09, Vol.3, p.e03523-e03523

2014

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Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes

PloS one, 2015-05, Vol.10 (5), p.e0127462-e0127462

2015

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Accelerated evolution after gene duplication: a time-dependent process affecting just one copy

Molecular biology and evolution, 2013-08, Vol.30 (8), p.1830-1842

2013

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Origins of De Novo Genes in Human and Chimpanzee

PLoS genetics, 2015-12, Vol.11 (12), p.e1005721-e1005721

2015

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No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution

Molecular biology and evolution, 2017-04, Vol.34 (4), p.843-856

2017

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Extensive post-transcriptional buffering of gene expression in the response to severe oxidative stress in baker’s yeast

Scientific reports, 2019-07, Vol.9 (1), p.11005-11, Article 11005

2019

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Origin of Primate Orphan Genes: A Comparative Genomics Approach

Molecular biology and evolution, 2009-03, Vol.26 (3), p.603-612

2009

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Translation of neutrally evolving peptides provides a basis for de novo gene evolution

Nature ecology & evolution, 2018-05, Vol.2 (5), p.890-896

2018

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High Polymorphism Levels of De Novo ORFs in a Yoruba Human Population

Genome biology and evolution, 2024-07, Vol.16 (7)

2024

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Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN

Nucleic acids research, 2003-07, Vol.31 (13), p.3651-3653

2003

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Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

Genome Biology, 2016-12, Vol.17 (1), p.251-251, Article 251

2016

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Transcriptomics in the wild: Hibernation physiology in free‐ranging dwarf lemurs

Molecular ecology, 2018-02, Vol.27 (3), p.709-722

2018

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Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms

Genome research, 2022-06, Vol.32 (6), p.1215-1227

2022

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Non-muscle-invasive micropapillary bladder cancer has a distinct lncRNA profile associated with unfavorable prognosis

British journal of cancer, 2022-07, Vol.127 (2), p.313-320

2022

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Heterologous microProtein expression identifies LITTLE NINJA, a dominant regulator of jasmonic acid signaling

Proceedings of the National Academy of Sciences - PNAS, 2020-10, Vol.117 (42), p.26197-26205

2020

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Genome-wide analysis of histidine repeats reveals their role in the localization of human proteins to the nuclear speckles compartment

PLoS genetics, 2009-03, Vol.5 (3), p.e1000397-e1000397

2009

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PROMO: detection of known transcription regulatory elements using species-tailored searches

Bioinformatics, 2002-02, Vol.18 (2), p.333-334

2002

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Uncovering adaptive evolution in the human lineage

BMC genomics, 2014-07, Vol.15 (1), p.599-599

2014

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New Genes and Functional Innovation in Mammals

Genome biology and evolution, 2017-07, Vol.9 (7), p.1886-1900

2017

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Differences in the evolutionary history of disease genes affected by dominant or recessive mutations

BMC genomics, 2006-07, Vol.7 (1), p.165-165, Article 165

2006

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De novo assembly and functional annotation of blood transcriptome of loggerhead turtle, and in silico characterization of peroxiredoxins and thioredoxins

PeerJ (San Francisco, CA), 2021-11, Vol.9, p.e12395-e12395, Article e12395

2021

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Microproteins encoded by noncanonical ORFs are a major source of tumor-specific antigens in a liver cancer patient meta-cohort

Science advances, 2024-07, Vol.10 (28), p.eadn3628

2024

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Translation of Small Open Reading Frames: Roles in Regulation and Evolutionary Innovation

Trends in genetics, 2019-03, Vol.35 (3), p.186-198

2019

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Structure and age jointly influence rates of protein evolution

PLoS computational biology, 2012-05, Vol.8 (5), p.e1002542-e1002542

2012

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Long non-coding RNAs as a source of new peptides

Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes

Accelerated evolution after gene duplication: a time-dependent process affecting just one copy

Origins of De Novo Genes in Human and Chimpanzee

No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution

Extensive post-transcriptional buffering of gene expression in the response to severe oxidative stress in baker’s yeast

Origin of Primate Orphan Genes: A Comparative Genomics Approach

Translation of neutrally evolving peptides provides a basis for de novo gene evolution

High Polymorphism Levels of De Novo ORFs in a Yoruba Human Population

Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

Transcriptomics in the wild: Hibernation physiology in free‐ranging dwarf lemurs

Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms

Non-muscle-invasive micropapillary bladder cancer has a distinct lncRNA profile associated with unfavorable prognosis

Chromatin-Bound IκBα Regulates a Subset of Polycomb Target Genes in Differentiation and Cancer

Heterologous microProtein expression identifies LITTLE NINJA, a dominant regulator of jasmonic acid signaling

Genome-wide analysis of histidine repeats reveals their role in the localization of human proteins to the nuclear speckles compartment

PROMO: detection of known transcription regulatory elements using species-tailored searches

Uncovering adaptive evolution in the human lineage

New Genes and Functional Innovation in Mammals

Differences in the evolutionary history of disease genes affected by dominant or recessive mutations

De novo assembly and functional annotation of blood transcriptome of loggerhead turtle, and in silico characterization of peroxiredoxins and thioredoxins

Microproteins encoded by noncanonical ORFs are a major source of tumor-specific antigens in a liver cancer patient meta-cohort

Translation of Small Open Reading Frames: Roles in Regulation and Evolutionary Innovation

Structure and age jointly influence rates of protein evolution

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