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Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data

BMC bioinformatics, 2018-06, Vol.19 (1), p.232-232, Article 232

2018

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Arteriolar niches maintain haematopoietic stem cell quiescence

Nature (London), 2013-10, Vol.502 (7473), p.637-643

2013

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The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data

BMC bioinformatics, 2020-12, Vol.21 (Suppl 21), p.562-18, Article 562

2020

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Single-cell analysis of transcriptome and DNA methylome in human oocyte maturation

PloS one, 2020-11, Vol.15 (11), p.e0241698-e0241698

2020

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Protein-Protein interactions uncover candidate ‘core genes’ within omnigenic disease networks

PLoS genetics, 2020-07, Vol.16 (7), p.e1008903

2020

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Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

Biology of sex differences, 2020-11, Vol.11 (1), p.61-61, Article 61

2020

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The Majority of CD45– Ter119– CD31– Bone Marrow Cell Fraction Is of Hematopoietic Origin and Contains Erythroid and Lymphoid Progenitors

Immunity (Cambridge, Mass.), 2018-10, Vol.49 (4), p.627-639.e6

2018

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Investigating skewness to understand gene expression heterogeneity in large patient cohorts

BMC bioinformatics, 2019-12, Vol.20 (Suppl 24), p.668-668, Article 668

2019

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Epstein-Barr virus exploits intrinsic B-lymphocyte transcription programs to achieve immortal cell growth

Proceedings of the National Academy of Sciences - PNAS, 2011-09, Vol.108 (36), p.14902-14907

2011

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Snai2 Maintains Bone Marrow Niche Cells by Repressing Osteopontin Expression

Developmental cell, 2020-06, Vol.53 (5), p.503-513.e5

2020

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Identification of a novel subgroup of endometrial cancer patients with loss of thyroid hormone receptor beta expression and improved survival

BMC cancer, 2020-09, Vol.20 (1), p.857-12, Article 857

2020

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Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development

PLoS genetics, 2015-08, Vol.11 (8), p.e1005428-e1005428

2015

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Single-Cell Gene Expression Profiles Define Self-Renewing, Pluripotent, and Lineage Primed States of Human Pluripotent Stem Cells

Stem cell reports, 2014-06, Vol.2 (6), p.881-895

2014

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Variance of gene expression identifies altered network constraints in neurological disease

PLoS genetics, 2011-08, Vol.7 (8), p.e1002207-e1002207

2011

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Decomposition of gene expression state space trajectories

PLoS computational biology, 2009-12, Vol.5 (12), p.e1000626-e1000626

2009

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Genome-wide siRNA screen for mediators of NF-κB activation

Proceedings of the National Academy of Sciences - PNAS, 2012-02, Vol.109 (7), p.2467-2472

2012

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attract: A method for identifying core pathways that define cellular phenotypes

PloS one, 2011-10, Vol.6 (10), p.e25445-e25445

2011

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Defining an informativeness metric for clustering gene expression data

Bioinformatics, 2011-04, Vol.27 (8), p.1094-1100

2011

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Aneuvis: web-based exploration of numerical chromosomal variation in single cells

BMC bioinformatics, 2019-06, Vol.20 (1), p.336-336, Article 336

2019

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Data-driven normalization strategies for high-throughput quantitative RT-PCR

BMC bioinformatics, 2009-04, Vol.10 (110), p.110-110, Article 110

2009

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Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease

Acta neuropathologica communications, 2022-04, Vol.10 (1), p.61-61, Article 61

2022

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The rise of the distributions: why non-normality is important for understanding the transcriptome and beyond

Biophysical reviews, 2019-02, Vol.11 (1), p.89-94

Mar, Jessica C.

2019

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Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage

PloS one, 2015-12, Vol.10 (12), p.e0144176-e0144176

2015

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Self-renewal of a purified Tie2⁺ hematopoietic stem cell population relies on mitochondrial clearance

Science (American Association for the Advancement of Science), 2016-12, Vol.354 (6316), p.1156-1160

2016

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Epstein-Barr virus nuclear antigen 3C regulated genes in lymphoblastoid cell lines

Proceedings of the National Academy of Sciences - PNAS, 2011-01, Vol.108 (1), p.337-342

2011

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Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data

Arteriolar niches maintain haematopoietic stem cell quiescence

The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data

Single-cell analysis of transcriptome and DNA methylome in human oocyte maturation

Protein-Protein interactions uncover candidate ‘core genes’ within omnigenic disease networks

Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

The Majority of CD45– Ter119– CD31– Bone Marrow Cell Fraction Is of Hematopoietic Origin and Contains Erythroid and Lymphoid Progenitors

Investigating skewness to understand gene expression heterogeneity in large patient cohorts

Epstein-Barr virus exploits intrinsic B-lymphocyte transcription programs to achieve immortal cell growth

Snai2 Maintains Bone Marrow Niche Cells by Repressing Osteopontin Expression

Identification of a novel subgroup of endometrial cancer patients with loss of thyroid hormone receptor beta expression and improved survival

Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development

Single-Cell Gene Expression Profiles Define Self-Renewing, Pluripotent, and Lineage Primed States of Human Pluripotent Stem Cells

Variance of gene expression identifies altered network constraints in neurological disease

Decomposition of gene expression state space trajectories

Genome-wide siRNA screen for mediators of NF-κB activation

attract: A method for identifying core pathways that define cellular phenotypes

Defining an informativeness metric for clustering gene expression data

Aneuvis: web-based exploration of numerical chromosomal variation in single cells

Data-driven normalization strategies for high-throughput quantitative RT-PCR

Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease

The rise of the distributions: why non-normality is important for understanding the transcriptome and beyond

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage

Self-renewal of a purified Tie2⁺ hematopoietic stem cell population relies on mitochondrial clearance

Epstein-Barr virus nuclear antigen 3C regulated genes in lymphoblastoid cell lines

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