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The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp

Nucleic acids research, 2018-08, Vol.46 (14), p.7284

2018

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Good-Practice Non-Radioactive Assays of Inorganic Pyrophosphatase Activities

Molecules (Basel, Switzerland), 2021-04, Vol.26 (8), p.2356

2021

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A methanolic extract of Zanthoxylum bungeanum modulates secondary metabolism regulator genes in Aspergillus flavus and shuts down aflatoxin production

Scientific reports, 2022-04, Vol.12 (1), p.5995-5995, Article 5995

2022

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Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria

Nature communications, 2018-04, Vol.9 (1), p.1478-12, Article 1478

2018

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The Mechanism of Energy Coupling in H+/Na+-Pumping Membrane Pyrophosphatase—Possibilities and Probabilities

International journal of molecular sciences, 2022-08, Vol.23 (16), p.9504

2022

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Pyrophosphate-Fueled Na+ and H+ Transport in Prokaryotes

Microbiology and Molecular Biology Reviews, 2013-06, Vol.77 (2), p.267-276

2013

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Active site opening and closure control translocation of multisubunit RNA polymerase

Nucleic acids research, 2012-08, Vol.40 (15), p.7442

2012

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Catalytic Asymmetry in Homodimeric H+-Pumping Membrane Pyrophosphatase Demonstrated by Non-Hydrolyzable Pyrophosphate Analogs

International journal of molecular sciences, 2021-09, Vol.22 (18), p.9820

2021

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Evolutionarily divergent, Na+-regulated H+-transporting membrane-bound pyrophosphatases

Biochemical journal, 2015-04, Vol.467 (2), p.281-291

2015

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Cytochrome cbb3 of Thioalkalivibrio is a Na+-pumping cytochrome oxidase

Proceedings of the National Academy of Sciences - PNAS, 2015-06, Vol.112 (25), p.7695-7700

2015

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Pre‐steady‐state kinetics and solvent isotope effects support the “billiard‐type” transport mechanism in Na+‐translocating pyrophosphatase

Protein science, 2022-09, Vol.31 (9), p.e4394-n/a

2022

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Functional and structural asymmetry suggest a unifying principle for catalysis in membrane-bound pyrophosphatases

EMBO reports, 2024-02, Vol.25 (2), p.853-875

2024

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Oxazinomycin arrests RNA polymerase at the polythymidine sequences

Nucleic acids research, 2019-11, Vol.47 (19), p.10296

2019

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Role of the potassium/lysine cationic center in catalysis and functional asymmetry in membrane-bound pyrophosphatases

Biochemical journal, 2018-03, Vol.475 (6), p.1141-1158

2018

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Real-Time Single-Molecule Studies of RNA Polymerase–Promoter Open Complex Formation Reveal Substantial Heterogeneity Along the Promoter-Opening Pathway

Journal of molecular biology, 2022-01, Vol.434 (2), p.167383-167383, Article 167383

2022

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CBR antimicrobials alter coupling between the bridge helix and the β subunit in RNA polymerase

Nature communications, 2014-03, Vol.5 (1), p.3408, Article 3408

2014

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Two independent evolutionary routes to Na+/H+ cotransport function in membrane pyrophosphatases

Biochemical journal, 2016-10, Vol.473 (19), p.3099-3111

2016

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Membrane Na+-pyrophosphatases Can Transport Protons at Low Sodium Concentrations

The Journal of biological chemistry, 2013-12, Vol.288 (49), p.35489-35499

2013

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Na+-translocating Membrane Pyrophosphatases Are Widespread in the Microbial World and Evolutionarily Precede H+-translocating Pyrophosphatases

The Journal of biological chemistry, 2011-06, Vol.286 (24), p.21633-21642

2011

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Monitoring translocation of multisubunit RNA polymerase along the DNA with fluorescent base analogues

Methods in molecular biology (Clifton, N.J.), 2015, Vol.1276, p.31

2015

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Na+-Pyrophosphatase: A Novel Primary Sodium Pump

Biochemistry (Easton), 2007-07, Vol.46 (30), p.8872-8878

2007

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Elucidating the Role of Conserved Glutamates in H+-pyrophosphatase of Rhodospirillum rubrum

The Journal of biological chemistry, 2004-06, Vol.279 (26), p.26811-26816

2004

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Mutual Effects of Cationic Ligands and Substrate on Activity of the Na+-Transporting Pyrophosphatase of Methanosarcina mazei

Biochemistry (Easton), 2008-12, Vol.47 (50), p.13447-13454

2008

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Membrane-Bound Pyrophosphatase of Thermotoga maritima Requires Sodium for Activity

Biochemistry (Easton), 2005-02, Vol.44 (6), p.2088-2096

2005

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Monovalent Salt Dependence of the Bacterial RNA Polymerase Open Complex Dynamics

Biophysical journal, 2020-02, Vol.118 (3), p.542a-543a

2020

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The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp

Good-Practice Non-Radioactive Assays of Inorganic Pyrophosphatase Activities

A methanolic extract of Zanthoxylum bungeanum modulates secondary metabolism regulator genes in Aspergillus flavus and shuts down aflatoxin production

Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria

The Mechanism of Energy Coupling in H+/Na+-Pumping Membrane Pyrophosphatase—Possibilities and Probabilities

Pyrophosphate-Fueled Na+ and H+ Transport in Prokaryotes

Active site opening and closure control translocation of multisubunit RNA polymerase

Catalytic Asymmetry in Homodimeric H+-Pumping Membrane Pyrophosphatase Demonstrated by Non-Hydrolyzable Pyrophosphate Analogs

Evolutionarily divergent, Na+-regulated H+-transporting membrane-bound pyrophosphatases

Cytochrome cbb3 of Thioalkalivibrio is a Na+-pumping cytochrome oxidase

Pre‐steady‐state kinetics and solvent isotope effects support the “billiard‐type” transport mechanism in Na+‐translocating pyrophosphatase

Functional and structural asymmetry suggest a unifying principle for catalysis in membrane-bound pyrophosphatases

Oxazinomycin arrests RNA polymerase at the polythymidine sequences

Role of the potassium/lysine cationic center in catalysis and functional asymmetry in membrane-bound pyrophosphatases

Real-Time Single-Molecule Studies of RNA Polymerase–Promoter Open Complex Formation Reveal Substantial Heterogeneity Along the Promoter-Opening Pathway

CBR antimicrobials alter coupling between the bridge helix and the β subunit in RNA polymerase

Two independent evolutionary routes to Na+/H+ cotransport function in membrane pyrophosphatases

Membrane Na+-pyrophosphatases Can Transport Protons at Low Sodium Concentrations

Na+-translocating Membrane Pyrophosphatases Are Widespread in the Microbial World and Evolutionarily Precede H+-translocating Pyrophosphatases

Monitoring translocation of multisubunit RNA polymerase along the DNA with fluorescent base analogues

Na+-Pyrophosphatase: A Novel Primary Sodium Pump

Elucidating the Role of Conserved Glutamates in H+-pyrophosphatase of Rhodospirillum rubrum

Mutual Effects of Cationic Ligands and Substrate on Activity of the Na+-Transporting Pyrophosphatase of Methanosarcina mazei

Membrane-Bound Pyrophosphatase of Thermotoga maritima Requires Sodium for Activity

Monovalent Salt Dependence of the Bacterial RNA Polymerase Open Complex Dynamics

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