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Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and SARS‐CoV‐2

Cladistics, 2021-10, Vol.37 (5), p.461-488

2021

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Echinoderm radial glia in adult cell renewal, indeterminate growth, and regeneration

Frontiers in neural circuits, 2023-09, Vol.17, p.1258370

2023

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An empirical test of the relationship between the bootstrap and likelihood ratio support in maximum likelihood phylogenetic analysis

Cladistics, 2022-06, Vol.38 (3), p.392-401

2022

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Predictions of the SARS-CoV-2 Omicron Variant (B.1.1.529) Spike Protein Receptor-Binding Domain Structure and Neutralizing Antibody Interactions

Frontiers in virology (online), 2022-02, Vol.2

2022

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A new strategy to infer circularity applied to four new complete frog mitogenomes

Ecology and evolution, 2018-04, Vol.8 (8), p.4011-4018

2018

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FLAVi: An Enhanced Annotator for Viral Genomes of Flaviviridae

Viruses, 2020-08, Vol.12 (8), p.892

2020

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Predicting changes in neutralizing antibody activity for SARS-CoV-2 XBB.1.5 using in silico protein modeling

Frontiers in virology (online), 2023-04, Vol.3

2023

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The Relationship between HERV, Interleukin, and Transcription Factor Expression in ZIKV Infected versus Uninfected Trophoblastic Cells

Cells (Basel, Switzerland), 2024-09, Vol.13 (17), p.1491

2024

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Fundamentals of genomic epidemiology, lessons learned from the coronavirus disease 2019 (COVID-19) pandemic, and new directions

Antimicrobial stewardship & healthcare epidemiology : ASHE, 2021, Vol.1 (1), p.e60, Article e60

2021

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Evidence of absence treated as absence of evidence: The effects of variation in the number and distribution of gaps treated as missing data on the results of standard maximum likelihood analysis

Molecular phylogenetics and evolution, 2021-01, Vol.154, p.106966-106966, Article 106966

2021

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Active Notch signaling is required for arm regeneration in a brittle star

PloS one, 2020-05, Vol.15 (5), p.e0232981-e0232981

2020

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Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research

BMC genomics, 2022-08, Vol.23 (1), p.1-574, Article 574

2022

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Editorial: Phylogenetics in the one health context

Frontiers in microbiology, 2023-10, Vol.14, p.1307616-1307616

2023

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Predicting antibody and ACE2 affinity for SARS-CoV-2 BA.2.86 and JN.1 with in silico protein modeling and docking

Frontiers in virology (online), 2024-07, Vol.4

2024

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A subterminal growth zone at arm tip likely underlies life-long indeterminate growth in brittle stars

Frontiers in zoology, 2022-04, Vol.19 (1), p.15-14, Article 15

2022

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Genome skimming is a low-cost and robust strategy to assemble complete mitochondrial genomes from ethanol preserved specimens in biodiversity studies

PeerJ (San Francisco, CA), 2019-09, Vol.7, p.e7543-e7543, Article e7543

2019

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Comparative Characterization of Mitogenomes From Five Orders of Cestodes (Eucestoda: Tapeworms)

Frontiers in genetics, 2021-12, Vol.12, p.788871-788871

2021

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EchinoDB: an update to the web-based application for genomic and transcriptomic data on echinoderms

BMC genomic data, 2022-10, Vol.23 (1), p.75-16, Article 75

2022

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YBYRÁ facilitates comparison of large phylogenetic trees

BMC bioinformatics, 2015-07, Vol.16 (1), p.204-204, Article 204

Machado, Denis Jacob

2015

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Unveiling putative modulators of mutable collagenous tissue in the brittle star Ophiomastix wendtii: an RNA-Seq analysis

BMC genomics, 2024-10, Vol.25 (1), Article 1013

2024

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FLAVi‐Web: A Web Annotator for Viral Genomes of Flaviviridae with a Revised Phylogeny of the Family

The FASEB journal, 2020-04, Vol.34 (S1), p.1-1

2020

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Phylogenetic Systematics of Dart-Poison Frogs and Their Relatives Revisited (Anura: Dendrobatoidea)

South american journal of herpetology, 2017-09, Vol.12 (s1), p.S1-S90

2017

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The first complete mitochondrial genome of the sand dollar Sinaechinocyamus mai (Echinoidea: Clypeasteroida)

Genomics (San Diego, Calif.), 2020-03, Vol.112 (2), p.1686-1693

2020

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The forgotten origin of Acanthobothrium Blanchard, 1848 (Tetraphyllidea: Onchobothriidae)

Zootaxa, 2012-10, Vol.3505 (1)

2012

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Fundamentos de la epidemiología genómica, lecciones aprendidas de la enfermedad por coronavirus (COVID-19) y nuevas direcciones

Magna Scientia UCEVA, 2022-12, Vol.2 (2)

2022

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Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and SARS‐CoV‐2

Echinoderm radial glia in adult cell renewal, indeterminate growth, and regeneration

An empirical test of the relationship between the bootstrap and likelihood ratio support in maximum likelihood phylogenetic analysis

Predictions of the SARS-CoV-2 Omicron Variant (B.1.1.529) Spike Protein Receptor-Binding Domain Structure and Neutralizing Antibody Interactions

A new strategy to infer circularity applied to four new complete frog mitogenomes

FLAVi: An Enhanced Annotator for Viral Genomes of Flaviviridae

Predicting changes in neutralizing antibody activity for SARS-CoV-2 XBB.1.5 using in silico protein modeling

The Relationship between HERV, Interleukin, and Transcription Factor Expression in ZIKV Infected versus Uninfected Trophoblastic Cells

Fundamentals of genomic epidemiology, lessons learned from the coronavirus disease 2019 (COVID-19) pandemic, and new directions

Evidence of absence treated as absence of evidence: The effects of variation in the number and distribution of gaps treated as missing data on the results of standard maximum likelihood analysis

Active Notch signaling is required for arm regeneration in a brittle star

Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research

Editorial: Phylogenetics in the one health context

Predicting antibody and ACE2 affinity for SARS-CoV-2 BA.2.86 and JN.1 with in silico protein modeling and docking

A subterminal growth zone at arm tip likely underlies life-long indeterminate growth in brittle stars

Genome skimming is a low-cost and robust strategy to assemble complete mitochondrial genomes from ethanol preserved specimens in biodiversity studies

Comparative Characterization of Mitogenomes From Five Orders of Cestodes (Eucestoda: Tapeworms)

EchinoDB: an update to the web-based application for genomic and transcriptomic data on echinoderms

YBYRÁ facilitates comparison of large phylogenetic trees

Unveiling putative modulators of mutable collagenous tissue in the brittle star Ophiomastix wendtii: an RNA-Seq analysis

FLAVi‐Web: A Web Annotator for Viral Genomes of Flaviviridae with a Revised Phylogeny of the Family

Phylogenetic Systematics of Dart-Poison Frogs and Their Relatives Revisited (Anura: Dendrobatoidea)

The first complete mitochondrial genome of the sand dollar Sinaechinocyamus mai (Echinoidea: Clypeasteroida)

The forgotten origin of Acanthobothrium Blanchard, 1848 (Tetraphyllidea: Onchobothriidae)

Fundamentos de la epidemiología genómica, lecciones aprendidas de la enfermedad por coronavirus (COVID-19) y nuevas direcciones

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