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Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2

Nature protocols, 2020-11, Vol.15 (11), p.3745-3776

2020

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Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

BMC bioinformatics, 2010-07, Vol.11 (1), p.378-378, Article 378

2010

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TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads

Nucleic acids research, 2017-07, Vol.45 (12), p.e111

2017

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Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

BMC genomics, 2007-11, Vol.8 (1), p.427-427

2007

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In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

PloS one, 2015-11, Vol.10 (11), p.e0143424-e0143424

2015

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Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution

The Plant cell, 2012-09, Vol.24 (9), p.3559-3574

2012

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Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes

PLoS genetics, 2023-02, Vol.19 (2), p.e1010633-e1010633

2023

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Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin

Proceedings of the National Academy of Sciences - PNAS, 2015-11, Vol.112 (44), p.13633-13638

2015

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Stretching the rules: monocentric chromosomes with multiple centromere domains

PLoS genetics, 2012-06, Vol.8 (6), p.e1002777-e1002777

2012

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Genome-wide analysis of repeat diversity across the family Musaceae

PloS one, 2014-06, Vol.9 (6), p.e98918-e98918

2014

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Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

PloS one, 2011-11, Vol.6 (11), p.e27335

2011

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Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea

The Plant journal : for cell and molecular biology, 2015-12, Vol.84 (6), p.1087-1099

2015

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Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

Bioinformatics, 2010-09, Vol.26 (17), p.2101-2108

2010

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Survey of extrachromosomal circular DNA derived from plant satellite repeats

BMC plant biology, 2008-08, Vol.8 (1), p.90-90, Article 90

2008

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Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species

Molecular biology and evolution, 2015-07, Vol.32 (7), p.1862-1879

2015

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Nondisjunction in Favor of a Chromosome: The Mechanism of Rye B Chromosome Drive during Pollen Mitosis

The Plant cell, 2012-10, Vol.24 (10), p.4124-4134

2012

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Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

BMC plant biology, 2010-09, Vol.10 (1), p.204-204

2010

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Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies

Annals of botany, 2011-02, Vol.107 (2), p.255-268

2011

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Significant Expansion of Vicia pannonica Genome Size Mediated by Amplification of a Single Type of Giant Retroelement

Genetics (Austin), 2006-06, Vol.173 (2), p.1047-1056

2006

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Pea (Pisum sativum L.) in the Genomic Era

Agronomy, 2012-06, Vol.2 (2), p.74-115

2012

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Hypervariable 3′ UTR region of plant LTR-retrotransposons as a source of novel satellite repeats

Gene, 2009-12, Vol.448 (2), p.198-206

2009

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RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

Bioinformatics, 2013-03, Vol.29 (6), p.792-793

2013

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Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

Mobile DNA, 2019-01, Vol.10 (1), p.1-1, Article 1

2019

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Ogre elements — A distinct group of plant Ty3/gypsy-like retrotransposons

Gene, 2007-04, Vol.390 (1), p.108-116

2007

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PlantSat: a specialized database for plant satellite repeats

Bioinformatics, 2002-01, Vol.18 (1), p.28-35

2002

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Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution

Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes

Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin

Stretching the rules: monocentric chromosomes with multiple centromere domains

Genome-wide analysis of repeat diversity across the family Musaceae

Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

Survey of extrachromosomal circular DNA derived from plant satellite repeats

Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species

Nondisjunction in Favor of a Chromosome: The Mechanism of Rye B Chromosome Drive during Pollen Mitosis

Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies

Significant Expansion of Vicia pannonica Genome Size Mediated by Amplification of a Single Type of Giant Retroelement

Pea (Pisum sativum L.) in the Genomic Era

Hypervariable 3′ UTR region of plant LTR-retrotransposons as a source of novel satellite repeats

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

Ogre elements — A distinct group of plant Ty3/gypsy-like retrotransposons

PlantSat: a specialized database for plant satellite repeats

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