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EVR: reconstruction of bacterial chromosome 3D structure models using error-vector resultant algorithm

BMC genomics, 2019-10, Vol.20 (1), p.738-10, Article 738

2019

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Computationally Reconstructed Interactome of Bradyrhizobium diazoefficiens USDA110 Reveals Novel Functional Modules and Protein Hubs for Symbiotic Nitrogen Fixation

International journal of molecular sciences, 2021-11, Vol.22 (21), p.11907

2021

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Independent Component Analysis Reveals the Transcriptional Regulatory Modules in Bradyrhizobium diazoefficiens USDA110

International journal of molecular sciences, 2023-08, Vol.24 (16), p.12544

2023

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Spatial organization of the transcriptional regulatory network of Saccharomyces cerevisiae

FEBS letters, 2019-04, Vol.593 (8), p.876-884

2019

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Chromosome structure modeling tools and their evaluation in bacteria

Briefings in bioinformatics, 2024-01, Vol.25 (2)

2024

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Spatial Chromosome Organization and Adaptation of Escherichia coli under Heat Stress

Microorganisms (Basel), 2024-06, Vol.12 (6), p.1229

2024

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Defective chromatin architectures in embryonic stem cells derived from somatic cell nuclear transfer impair their differentiation potentials

Cell death & disease, 2021-11, Vol.12 (12), p.1085-1085, Article 1085

2021

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Thermophilic Adaptation of Protein Complexes Inferred from Proteomic Homology Modeling

Structure (London), 2010-07, Vol.18 (7), p.819-828

2010

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Reconstruction of the genome-scale metabolic network model of Sinorhizobium fredii CCBAU45436 for free-living and symbiotic states

Frontiers in bioengineering and biotechnology, 2024-03, Vol.12, p.1377334-1377334

2024

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Phosphates as Energy Sources to Expand Metabolic Networks

Life (Basel, Switzerland), 2019-05, Vol.9 (2), p.43

2019

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The Spatial Organization of Bacterial Transcriptional Regulatory Networks

Microorganisms (Basel), 2022-11, Vol.10 (12), p.2366

2022

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EVRC: reconstruction of chromosome 3D structure models using error-vector resultant algorithm with clustering coefficient

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11)

2023

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Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction

Nature genetics, 2017-05, Vol.49 (5), p.765-772

2017

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Correction: Defective chromatin architectures in embryonic stem cells derived from somatic cell nuclear transfer impair their differentiation potentials

Cell death & disease, 2021-12, Vol.12 (12), p.1132-1132, Article 1132

2021

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Exploring the common molecular basis for the universal DNA mutation bias: Revival of Löwdin mutation model

Biochemical and biophysical research communications, 2011-06, Vol.409 (3), p.367-371

2011

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Direct correlation between proteins' folding rates and their amino acid compositions: An ab initio folding rate prediction

Proteins, structure, function, and bioinformatics, 2006-11, Vol.65 (2), p.362-372

2006

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What Determines Protein Folding Type? An Investigation of Intrinsic Structural Properties and its Implications for Understanding Folding Mechanisms

Journal of molecular biology, 2007-07, Vol.370 (3), p.439-448

2007

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Construction and simulation of the Bradyrhizobium diazoefficiens USDA110 metabolic network: a comparison between free-living and symbiotic states

Molecular bioSystems, 2017-02, Vol.13 (3), p.607-620

2017

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Dual Antiplatelet Therapy vs Alteplase for Patients With Minor Nondisabling Acute Ischemic Stroke: The ARAMIS Randomized Clinical Trial

JAMA : the journal of the American Medical Association, 2023-06, Vol.329 (24), p.2135

2023

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Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins

Nucleic acids research, 2014-03, Vol.42 (5), p.2879

2014

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Reannotation of hypothetical ORFs in plant pathogen Erwinia carotovora subsp. atroseptica SCRI1043

The FEBS journal, 2008, Vol.275 (1), p.198-206

2008

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Abundance and Temperature Dependency of Protein-Protein Interaction Revealed by Interface Structure Analysis and Stability Evolution

Scientific reports, 2016-05, Vol.6 (1), p.26737-26737, Article 26737

2016

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Effect of Argatroban Plus Intravenous Alteplase vs Intravenous Alteplase Alone on Neurologic Function in Patients With Acute Ischemic Stroke: The ARAIS Randomized Clinical Trial

JAMA : the journal of the American Medical Association, 2023-02, Vol.329 (8), p.640

2023

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Chemical basis of metabolic network organization

PLoS computational biology, 2011-10, Vol.7 (10), p.e1002214-e1002214

2011

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Amino Acid Flux from Metabolic Network Benefits Protein Translation: the Role of Resource Availability

Scientific reports, 2015-06, Vol.5 (1), p.11113-11113, Article 11113

2015

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EVR: reconstruction of bacterial chromosome 3D structure models using error-vector resultant algorithm

Computationally Reconstructed Interactome of Bradyrhizobium diazoefficiens USDA110 Reveals Novel Functional Modules and Protein Hubs for Symbiotic Nitrogen Fixation

Independent Component Analysis Reveals the Transcriptional Regulatory Modules in Bradyrhizobium diazoefficiens USDA110

Spatial organization of the transcriptional regulatory network of Saccharomyces cerevisiae

Chromosome structure modeling tools and their evaluation in bacteria

Spatial Chromosome Organization and Adaptation of Escherichia coli under Heat Stress

Defective chromatin architectures in embryonic stem cells derived from somatic cell nuclear transfer impair their differentiation potentials

Thermophilic Adaptation of Protein Complexes Inferred from Proteomic Homology Modeling

Reconstruction of the genome-scale metabolic network model of Sinorhizobium fredii CCBAU45436 for free-living and symbiotic states

Phosphates as Energy Sources to Expand Metabolic Networks

The Spatial Organization of Bacterial Transcriptional Regulatory Networks

EVRC: reconstruction of chromosome 3D structure models using error-vector resultant algorithm with clustering coefficient

Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction

Correction: Defective chromatin architectures in embryonic stem cells derived from somatic cell nuclear transfer impair their differentiation potentials

Exploring the common molecular basis for the universal DNA mutation bias: Revival of Löwdin mutation model

Direct correlation between proteins' folding rates and their amino acid compositions: An ab initio folding rate prediction

What Determines Protein Folding Type? An Investigation of Intrinsic Structural Properties and its Implications for Understanding Folding Mechanisms

Construction and simulation of the Bradyrhizobium diazoefficiens USDA110 metabolic network: a comparison between free-living and symbiotic states

Dual Antiplatelet Therapy vs Alteplase for Patients With Minor Nondisabling Acute Ischemic Stroke: The ARAMIS Randomized Clinical Trial

Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins

Reannotation of hypothetical ORFs in plant pathogen Erwinia carotovora subsp. atroseptica SCRI1043

Abundance and Temperature Dependency of Protein-Protein Interaction Revealed by Interface Structure Analysis and Stability Evolution

Effect of Argatroban Plus Intravenous Alteplase vs Intravenous Alteplase Alone on Neurologic Function in Patients With Acute Ischemic Stroke: The ARAIS Randomized Clinical Trial

Chemical basis of metabolic network organization

Amino Acid Flux from Metabolic Network Benefits Protein Translation: the Role of Resource Availability

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