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The diversity of H3 loops determines the antigen‐binding tendencies of antibody CDR loops

Protein science, 2016-04, Vol.25 (4), p.815-825

2016

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Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators

BMC bioinformatics, 2014-06, Vol.15 (1), p.213-213, Article 213

2014

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Partner-aware prediction of interacting residues in protein-protein complexes from sequence data

PloS one, 2011-12, Vol.6 (12), p.e29104-e29104

2011

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Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks

BMC bioinformatics, 2019-11, Vol.20 (1), p.581-581, Article 581

2019

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Predicting Fraction Unbound in Human Plasma from Chemical Structure: Improved Accuracy in the Low Value Ranges

Molecular pharmaceutics, 2018-11, Vol.15 (11), p.5302-5311

2018

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Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota

Nature communications, 2022-08, Vol.13 (1), p.4477-4477, Article 4477

2022

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Essential Role of CARD14 in Murine Experimental Psoriasis

The Journal of immunology (1950), 2018-01, Vol.200 (1), p.71-81

2018

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Recent developments of sequence-based prediction of protein–protein interactions

Biophysical reviews, 2022-12, Vol.14 (6), p.1393-1411

2022

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Systems Biology Approaches to a Rational Drug Discovery Paradigm

Current topics in medicinal chemistry, 2016-01, Vol.16 (9), p.1009

2016

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Recent developments of sequence-based prediction of protein–protein interactions

Biophysical reviews, 2022-12, Vol.14 (6), p.1393-1411

2022

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Development of an In Silico Prediction Model for P‑glycoprotein Efflux Potential in Brain Capillary Endothelial Cells toward the Prediction of Brain Penetration

Journal of medicinal chemistry, 2021-03, Vol.64 (5), p.2725-2738

2021

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Temporal dynamics from phosphoproteomics using endoscopic biopsy specimens provides new therapeutic targets in stage IV gastric cancer

Scientific reports, 2022-03, Vol.12 (1), p.4419-4419, Article 4419

2022

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Integration of Ligand and Structure Based Approaches for CSAR-2014

Journal of chemical information and modeling, 2016-06, Vol.56 (6), p.974-987

2016

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The Trends and Future Prospective of In Silico Models from the Viewpoint of ADME Evaluation in Drug Discovery

Pharmaceutics, 2023-11, Vol.15 (11), p.2619

2023

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Selective covalent targeting of SARS-CoV-2 main protease by enantiopure chlorofluoroacetamide

Chemical science (Cambridge), 2022-03, Vol.13 (10), p.3027-3034

2022

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Gut microbial composition in patients with atrial fibrillation: effects of diet and drugs

Heart and vessels, 2021-01, Vol.36 (1), p.105-114

2021

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TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery

PloS one, 2011-03, Vol.6 (3), p.e17844

2011

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Prediction of detailed enzyme functions and identification of specificity determining residues by random forests

PloS one, 2014-01, Vol.9 (1), p.e84623

2014

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Attention network for predicting T-cell receptor-peptide binding can associate attention with interpretable protein structural properties

Frontiers in bioinformatics, 2023-12, Vol.3, p.1274599-1274599

2023

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Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts

BMC microbiology, 2021-05, Vol.21 (1), p.151-151, Article 151

2021

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Flavivirus recruits the valosin-containing protein–NPL4 complex to induce stress granule disassembly for efficient viral genome replication

The Journal of biological chemistry, 2022-03, Vol.298 (3), p.101597-101597, Article 101597

2022

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Prediction of the secondary structure of short DNA aptamers

Biophysics and Physicobiology, 2019, Vol.16, pp.287-294

2019

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Method for preparing DNA from feces in guanidine thiocyanate solution affects 16S rRNA-based profiling of human microbiota diversity

Scientific reports, 2017-06, Vol.7 (1), p.4339-10, Article 4339

2017

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Idiopathic pulmonary fibrosis-specific Bayesian network integrating extracellular vesicle proteome and clinical information

Scientific reports, 2024-01, Vol.14 (1), p.1315-1315, Article 1315

2024

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Blockade of TLR3 protects mice from lethal radiation-induced gastrointestinal syndrome

Nature communications, 2014-03, Vol.5 (1), p.3492, Article 3492

2014

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The diversity of H3 loops determines the antigen‐binding tendencies of antibody CDR loops

Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators

Partner-aware prediction of interacting residues in protein-protein complexes from sequence data

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks

Predicting Fraction Unbound in Human Plasma from Chemical Structure: Improved Accuracy in the Low Value Ranges

Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota

Essential Role of CARD14 in Murine Experimental Psoriasis

Recent developments of sequence-based prediction of protein–protein interactions

Systems Biology Approaches to a Rational Drug Discovery Paradigm

Recent developments of sequence-based prediction of protein–protein interactions

Development of an In Silico Prediction Model for P‑glycoprotein Efflux Potential in Brain Capillary Endothelial Cells toward the Prediction of Brain Penetration

Temporal dynamics from phosphoproteomics using endoscopic biopsy specimens provides new therapeutic targets in stage IV gastric cancer

Integration of Ligand and Structure Based Approaches for CSAR-2014

The Trends and Future Prospective of In Silico Models from the Viewpoint of ADME Evaluation in Drug Discovery

Selective covalent targeting of SARS-CoV-2 main protease by enantiopure chlorofluoroacetamide

Gut microbial composition in patients with atrial fibrillation: effects of diet and drugs

TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery

Prediction of detailed enzyme functions and identification of specificity determining residues by random forests

Attention network for predicting T-cell receptor-peptide binding can associate attention with interpretable protein structural properties

Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts

Flavivirus recruits the valosin-containing protein–NPL4 complex to induce stress granule disassembly for efficient viral genome replication

Prediction of the secondary structure of short DNA aptamers

Method for preparing DNA from feces in guanidine thiocyanate solution affects 16S rRNA-based profiling of human microbiota diversity

Idiopathic pulmonary fibrosis-specific Bayesian network integrating extracellular vesicle proteome and clinical information

Blockade of TLR3 protects mice from lethal radiation-induced gastrointestinal syndrome

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