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Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease

Nature communications, 2018-07, Vol.9 (1), p.2873-14, Article 2873

2018

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Catching a resurgence: Increase in SARS-CoV-2 viral RNA identified in wastewater 48 h before COVID-19 clinical tests and 96 h before hospitalizations

The Science of the total environment, 2021-05, Vol.770, p.145319-145319, Article 145319

2021

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An in vitro model maintaining taxon-specific functional activities of the gut microbiome

Nature communications, 2019-09, Vol.10 (1), p.4146-11, Article 4146

2019

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RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

Microbiome, 2020-03, Vol.8 (1), p.33-33, Article 33

2020

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Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn’s disease

Nature communications, 2020-08, Vol.11 (1), p.4120-4120, Article 4120

2020

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The enigma of soluble LDLR: could inflammation be the key?

Lipids in health and disease, 2020-02, Vol.19 (1), p.17-17, Article 17

2020

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MetaLab: an automated pipeline for metaproteomic data analysis

Microbiome, 2017-12, Vol.5 (1), p.157-157, Article 157

2017

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Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

Gut microbes, 2022-12, Vol.14 (1), p.2035658-2035658

2022

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Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

Nature communications, 2023-06, Vol.14 (1), p.3428-14, Article 3428

2023

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Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes

Gut microbes, 2020-09, Vol.11 (5), p.1348-1361

2020

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PCSK9-deficient mice exhibit impaired glucose tolerance and pancreatic islet abnormalities

FEBS letters, 2010-02, Vol.584 (4), p.701-706

2010

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The Effect of PCSK9 Loss-of-Function Variants on the Postprandial Lipid and ApoB-Lipoprotein Response

The journal of clinical endocrinology and metabolism, 2017-09, Vol.102 (9), p.3452-3460

2017

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Plasma PCSK9 levels are significantly modified by statins and fibrates in humans

Lipids in health and disease, 2008-06, Vol.7 (1), p.22-22

2008

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A charge-suppressing strategy for probing protein methylation

Chemical communications (Cambridge, England), 2016-01, Vol.52 (31), p.5474-5477

2016

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MetaPep: A core peptide database for faster human gut metaproteomics database searches

Computational and structural biotechnology journal, 2023-01, Vol.21, p.4228-4237

2023

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Early postnatal defects in neurogenesis in the 3xTg mouse model of Alzheimer's disease

Cell death & disease, 2023-02, Vol.14 (2), p.138-138, Article 138

2023

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Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL ® , on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach

Viruses, 2021-08, Vol.13 (9), p.1734

2021

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The proteomic landscape of the suprachiasmatic nucleus clock reveals large-scale coordination of key biological processes

PLoS genetics, 2014-10, Vol.10 (10), p.e1004695-e1004695

2014

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Aging Disrupts the Circadian Patterns of Protein Expression in the Murine Hippocampus

Frontiers in aging neuroscience, 2020-01, Vol.11, p.368-368

2020

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Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome

Microbiology spectrum, 2022-06, Vol.10 (4), p.e0041222-e0041222

2022

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Quercetin-3-glucoside increases low-density lipoprotein receptor (LDLR) expression, attenuates proprotein convertase subtilisin/kexin 9 (PCSK9) secretion, and stimulates LDL uptake by Huh7 human hepatocytes in culture

FEBS open bio, 2014-01, Vol.4 (1), p.755-762

2014

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A functional ecological network based on metaproteomics responses of individual gut microbiomes to resistant starches

Computational and structural biotechnology journal, 2020-01, Vol.18, p.3833-3842

2020

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Therapeutic Targeting of Casein Kinase 1δ/ε in an Alzheimer’s Disease Mouse Model

Journal of proteome research, 2019-09, Vol.18 (9), p.3383-3393

2019

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Quantitative analysis of SARS-CoV-2 RNA from wastewater solids in communities with low COVID-19 incidence and prevalence

Water research (Oxford), 2021-01, Vol.188, p.116560-116560, Article 116560

2021

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Deep Metaproteomics Approach for the Study of Human Microbiomes

Analytical chemistry (Washington), 2017-09, Vol.89 (17), p.9407-9415

2017

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Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease

Catching a resurgence: Increase in SARS-CoV-2 viral RNA identified in wastewater 48 h before COVID-19 clinical tests and 96 h before hospitalizations

An in vitro model maintaining taxon-specific functional activities of the gut microbiome

RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn’s disease

The enigma of soluble LDLR: could inflammation be the key?

MetaLab: an automated pipeline for metaproteomic data analysis

Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes

PCSK9-deficient mice exhibit impaired glucose tolerance and pancreatic islet abnormalities

The Effect of PCSK9 Loss-of-Function Variants on the Postprandial Lipid and ApoB-Lipoprotein Response

Plasma PCSK9 levels are significantly modified by statins and fibrates in humans

A charge-suppressing strategy for probing protein methylation

MetaPep: A core peptide database for faster human gut metaproteomics database searches

Early postnatal defects in neurogenesis in the 3xTg mouse model of Alzheimer's disease

Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL ® , on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach

The proteomic landscape of the suprachiasmatic nucleus clock reveals large-scale coordination of key biological processes

Aging Disrupts the Circadian Patterns of Protein Expression in the Murine Hippocampus

Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome

Quercetin-3-glucoside increases low-density lipoprotein receptor (LDLR) expression, attenuates proprotein convertase subtilisin/kexin 9 (PCSK9) secretion, and stimulates LDL uptake by Huh7 human hepatocytes in culture

A functional ecological network based on metaproteomics responses of individual gut microbiomes to resistant starches

Therapeutic Targeting of Casein Kinase 1δ/ε in an Alzheimer’s Disease Mouse Model

Quantitative analysis of SARS-CoV-2 RNA from wastewater solids in communities with low COVID-19 incidence and prevalence

Deep Metaproteomics Approach for the Study of Human Microbiomes

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