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diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates

PloS one, 2013-06, Vol.8 (6), p.e65598

2013

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PORE SYSTEM QUANTIFICATION AND CHARACTERIZATION IN VOLCANIC ROCKS: A CASE STUDY FROM THE LOWER CRETACEOUS SERRA GERAL GROUP, PARANÁ BASIN, SOUTHERN BRAZIL

Journal of petroleum geology, 2019-07, Vol.42 (3), p.301-317

2019

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The novel Akt inhibitor, perifosine, induces caspase-dependent apoptosis and downregulates P-glycoprotein expression in multidrug-resistant human T-acute leukemia cells by a JNK-dependent mechanism

Leukemia, 2008-06, Vol.22 (6), p.1106-1116

2008

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Mining a human transcriptome database for chemical modulators of NRF2

PloS one, 2020-09, Vol.15 (9), p.e0239367

2020

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Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN

PloS one, 2017-01, Vol.12 (1), p.e0169249-e0169249

2017

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Backup transcription factor binding sites protect human genes from mutations in the promoter

PloS one, 2023-08, Vol.18 (8), p.e0281569-e0281569

2023

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Analysis of gene duplication within the Arabidopsis NUCLEAR FACTOR Y, subunit B (NF-YB) protein family reveals domains under both purifying and diversifying selection

PloS one, 2023-08, Vol.18 (8), p.e0289332-e0289332

2023

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Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes

PloS one, 2014-10, Vol.9 (10), p.e109443-e109443

2014

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p73 regulates epidermal wound healing and induced keratinocyte programming

PloS one, 2019-06, Vol.14 (6), p.e0218458-e0218458

2019

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Beliefs about people with albinism in Uganda: A qualitative study using the Common-Sense Model

PloS one, 2018-10, Vol.13 (10), p.e0205774-e0205774

2018

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MafB, WDR77, and ß-catenin interact with each other and have similar genome association profiles

PloS one, 2022-04, Vol.17 (4), p.e0264799-e0264799

2022

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Optimal differentiation of in vitro keratinocytes requires multifactorial external control

PloS one, 2013-10, Vol.8 (10), p.e77507-e77507

2013

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Alternative isoforms of KDM2A and KDM2B lysine demethylases negatively regulate canonical Wnt signaling

PloS one, 2020-10, Vol.15 (10), p.e0236612-e0236612

2020

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AIRE is induced in oral squamous cell carcinoma and promotes cancer gene expression

PloS one, 2020-02, Vol.15 (2), p.e0222689-e0222689

2020

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Genome-wide analysis of HOXC4 and HOXC6 regulated genes and binding sites in prostate cancer cells

PloS one, 2020-02, Vol.15 (2), p.e0228590-e0228590

2020

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DELTA: A Distal Enhancer Locating Tool Based on AdaBoost Algorithm and Shape Features of Chromatin Modifications

PloS one, 2015-06, Vol.10 (6), p.e0130622-e0130622

2015

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Cell-cell adhesion regulates Merlin/NF2 interaction with the PAF complex

PloS one, 2021-08, Vol.16 (8), p.e0254697-e0254697

2021

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Genome-wide binding analysis of 195 DNA binding proteins reveals “reservoir” promoters and human specific SVA-repeat family regulation

PloS one, 2021-06, Vol.16 (6), p.e0237055-e0237055

2021

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Regional differences in mental health stigma-Analysis of nationally representative data from the Health Survey for England, 2014

PloS one, 2019-01, Vol.14 (1), p.e0210834

2019

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Deletion of Mediator 1 suppresses TGFβ signaling leading to changes in epidermal lineages and regeneration

PloS one, 2020-08, Vol.15 (8), p.e0238076-e0238076

2020

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Genomic Organization of Human Transcription Initiation Complexes

PloS one, 2016-02, Vol.11 (2), p.e0149339-e0149339

2016

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CpG content-dependent associations between transcription factors and histone modifications

PloS one, 2021-04, Vol.16 (4), p.e0249985-e0249985

2021

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Analysis of HER2 genomic binding in breast cancer cells identifies a global role in direct gene regulation

PloS one, 2019-11, Vol.14 (11), p.e0225180-e0225180

2019

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Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data

PloS one, 2020-12, Vol.15 (12), p.e0243332-e0243332

2020

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Model-based analysis of chromatin interactions from dCas9-Based CAPTURE-3C-seq

PloS one, 2020-07, Vol.15 (7), p.e0236666-e0236666

2020

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