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Possible future waves of SARS-CoV-2 infection generated by variants of concern with a range of characteristics

Nature communications, 2021-09, Vol.12 (1), p.5730-5730, Article 5730

2021

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The social role of defective viral genomes in chronic viral infections: a commentary on Leeks et al. 2023

Journal of evolutionary biology, 2023-11, Vol.36 (11), p.1577-1581

2023

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Challenges in control of COVID-19: short doubling time and long delay to effect of interventions

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2021-07, Vol.376 (1829), p.20200264

2021

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Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods

Proceedings of the National Academy of Sciences - PNAS, 2024-03, Vol.121 (12), p.e2317284121-e2317284121

2024

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Time to evaluate COVID-19 contact-tracing apps

Nature medicine, 2021-03, Vol.27 (3), p.361-362

2021

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Effect of the Latent Reservoir on the Evolution of HIV at the Within- and Between-Host Levels

PLoS computational biology, 2017-01, Vol.13 (1), p.e1005228-e1005228

2017

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On the diverse and opposing effects of nutrition on pathogen virulence

Proceedings of the Royal Society. B, Biological sciences, 2019-07, Vol.286 (1906), p.20191220

2019

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SARS-CoV-2 within-host diversity and transmission

Science (American Association for the Advancement of Science), 2021-04, Vol.372 (6539)

2021

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Short-Sighted Virus Evolution and a Germline Hypothesis for Chronic Viral Infections

Trends in microbiology (Regular ed.), 2017-05, Vol.25 (5), p.336-348

2017

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New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels

Proceedings of the Royal Society. B, Biological sciences, 2012-08, Vol.279 (1741), p.3367-3375

2012

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IS HIV SHORT-SIGHTED? INSIGHTS FROM A MULTISTRAIN NESTED MODEL

Evolution, 2013-10, Vol.67 (10), p.2769-2782

2013

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EpiBeds: Data informed modelling of the COVID-19 hospital burden in England

PLoS computational biology, 2022-09, Vol.18 (9), p.e1010406

2022

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Large Variations in HIV-1 Viral Load Explained by Shifting-Mosaic Metapopulation Dynamics

PLoS biology, 2016-10, Vol.14 (10), p.e1002567-e1002567

2016

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OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing

PLoS computational biology, 2021-07, Vol.17 (7), p.e1009146-e1009146

2021

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COVID-19: full peer review in hours

Nature (London), 2020-08, Vol.584 (7820), p.192-192

2020

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Coronavirus: full peer review in hours

Nature (London), 2020-08, Vol.584 (7820), p.192-192

2020

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Virulence and Pathogenesis of HIV-1 Infection: An Evolutionary Perspective

Science (American Association for the Advancement of Science), 2014-03, Vol.343 (6177), p.1328-1328

2014

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Evolution of HIV-1 within untreated individuals and at the population scale in Uganda

PLoS pathogens, 2018-07, Vol.14 (7), p.e1007167-e1007167

2018

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A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

PLoS pathogens, 2020-06, Vol.16 (6), p.e1008171-e1008171

2020

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Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs

Proceedings of the National Academy of Sciences - PNAS, 2022-09, Vol.119 (38), p.1-e2210604119

2022

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Hepatitis B Virus Adaptation to the CD8+ T Cell Response: Consequences for Host and Pathogen

Frontiers in immunology, 2018-07, Vol.9, p.1561-1561

2018

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Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant

Nature communications, 2022-01, Vol.13 (1), p.460-460, Article 460

2022

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Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey

Proceedings of the Royal Society. B, Biological sciences, 2023-10, Vol.290 (2009), p.20231284-20231284

2023

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High-Resolution Evolutionary Analysis of Within-Host Hepatitis C Virus Infection

The Journal of infectious diseases, 2019-05, Vol.219 (11), p.1722-1729

2019

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Structure-Guided Identification of a Nonhuman Morbillivirus with Zoonotic Potential

Journal of virology, 2018-12, Vol.92 (23)

2018

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Possible future waves of SARS-CoV-2 infection generated by variants of concern with a range of characteristics

The social role of defective viral genomes in chronic viral infections: a commentary on Leeks et al. 2023

Challenges in control of COVID-19: short doubling time and long delay to effect of interventions

Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods

Time to evaluate COVID-19 contact-tracing apps

Effect of the Latent Reservoir on the Evolution of HIV at the Within- and Between-Host Levels

On the diverse and opposing effects of nutrition on pathogen virulence

SARS-CoV-2 within-host diversity and transmission

Short-Sighted Virus Evolution and a Germline Hypothesis for Chronic Viral Infections

New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels

IS HIV SHORT-SIGHTED? INSIGHTS FROM A MULTISTRAIN NESTED MODEL

EpiBeds: Data informed modelling of the COVID-19 hospital burden in England

Large Variations in HIV-1 Viral Load Explained by Shifting-Mosaic Metapopulation Dynamics

OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing

COVID-19: full peer review in hours

Coronavirus: full peer review in hours

Virulence and Pathogenesis of HIV-1 Infection: An Evolutionary Perspective

Evolution of HIV-1 within untreated individuals and at the population scale in Uganda

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs

Hepatitis B Virus Adaptation to the CD8+ T Cell Response: Consequences for Host and Pathogen

Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant

Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey

High-Resolution Evolutionary Analysis of Within-Host Hepatitis C Virus Infection

Structure-Guided Identification of a Nonhuman Morbillivirus with Zoonotic Potential

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