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Statistical Analysis of Metagenomics Data

Genomics & Informatics, 2019, 17(1), , pp.6-6

Calle, M Luz

2019

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coda4microbiome: compositional data analysis for microbiome cross-sectional and longitudinal studies

BMC bioinformatics, 2023-03, Vol.24 (1), p.82-19, Article 82

2023

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Challenges in the Integration of Omics and Non-Omics Data

Genes, 2019-03, Vol.10 (3), p.238

2019

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Variable selection in microbiome compositional data analysis

NAR genomics and bioinformatics, 2020-06, Vol.2 (2)

2020

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mbmdr: an R package for exploring gene–gene interactions associated with binary or quantitative traits

Bioinformatics, 2010-09, Vol.26 (17), p.2198-2199

2010

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AUC-RF: A New Strategy for Genomic Profiling with Random Forest

Human heredity, 2011-01, Vol.72 (2), p.121-132

2011

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Utilizing co-abundances of antimicrobial resistance genes to identify potential co-selection in the resistome

Microbiology spectrum, 2024-07, Vol.12 (7), p.e0410823

2024

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Kernel-Based Measure of Variable Importance for Genetic Association Studies

The international journal of biostatistics, 2017-06, Vol.13 (2), p.257

2017

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Genetic Susceptibility to Distinct Bladder Cancer Subphenotypes

European urology, 2010-02, Vol.57 (2), p.283-292

2010

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Tutorial on methods for interval-censored data and their implementation in R

Statistical Modelling, 2009-12, Vol.9 (4), p.259-297

2009

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Predictive signature of response to neoadjuvant chemotherapy in muscle-invasive bladder cancer integrating mRNA expression, taxonomic subtypes, and clinicopathological features

Frontiers in oncology, 2023-08, Vol.13, p.1155244

2023

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Efficient and Powerful Method for Combining P-Values in Genome-Wide Association Studies

IEEE/ACM transactions on computational biology and bioinformatics, 2016-11, Vol.13 (6), p.1100-1106

2016

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Model‐Based Multifactor Dimensionality Reduction for detecting epistasis in case–control data in the presence of noise

Annals of human genetics, 2011-01, Vol.75 (1), p.78-89

2011

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Analysis of the winning probability and the scoring actions in the American professional soccer championship. [Análisis de la probabilidad de ganar y de las acciones que conducen al gol en la liga americana de fútbol profesional]

Revista internacional de ciencias del deporte, 2020-01, Vol.16 (59), p.67-84

2020

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FAM-MDR: a flexible family-based multifactor dimensionality reduction technique to detect epistasis using related individuals

PloS one, 2010-04, Vol.5 (4), p.e10304-e10304

2010

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Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma

Cancer cell, 2016-07, Vol.30 (1), p.27-42

2016

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Letter to the Editor: Stability of Random Forest importance measures

Briefings in bioinformatics, 2011-01, Vol.12 (1), p.86-89

2011

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Genetic variation in the TP53 pathway and bladder cancer risk. a comprehensive analysis

PloS one, 2014-05, Vol.9 (5), p.e89952

2014

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A dynamic model for the risk of bladder cancer progression

Statistics in medicine, 2012-02, Vol.31 (3), p.287-300

2012

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Global adaptive rank truncated product method for gene-set analysis in association studies

Biometrical journal, 2014-09, Vol.56 (5), p.901-911

2014

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Alteration of five organic compounds by glow discharge plasma and UV light under simulated Mars conditions

Icarus (New York, N.Y. 1962), 2010-08, Vol.208 (2), p.749-757

2010

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Whole Genome Prediction of Bladder Cancer Risk With the Bayesian LASSO

Genetic epidemiology, 2014-07, Vol.38 (5), p.467-476

2014

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Microbiome compositional data analysis for survival studies

NAR genomics and bioinformatics, 2024-06, Vol.6 (2)

2024

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Interval censoring: Model characterizations for the validity of the simplified likelihood

Canadian journal of statistics, 2004-09, Vol.32 (3), p.315-326

2004

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Statistical Analysis of Metagenomics Data

coda4microbiome: compositional data analysis for microbiome cross-sectional and longitudinal studies

Challenges in the Integration of Omics and Non-Omics Data

Variable selection in microbiome compositional data analysis

mbmdr: an R package for exploring gene–gene interactions associated with binary or quantitative traits

AUC-RF: A New Strategy for Genomic Profiling with Random Forest

Utilizing co-abundances of antimicrobial resistance genes to identify potential co-selection in the resistome

Kernel-Based Measure of Variable Importance for Genetic Association Studies

Genetic Susceptibility to Distinct Bladder Cancer Subphenotypes

Tutorial on methods for interval-censored data and their implementation in R

Predictive signature of response to neoadjuvant chemotherapy in muscle-invasive bladder cancer integrating mRNA expression, taxonomic subtypes, and clinicopathological features

Efficient and Powerful Method for Combining P-Values in Genome-Wide Association Studies

Application of multi-SNP approaches Bayesian LASSO and AUC-RF to detect main effects of inflammatory-gene variants associated with bladder cancer risk

Model‐Based Multifactor Dimensionality Reduction for detecting epistasis in case–control data in the presence of noise

Analysis of the winning probability and the scoring actions in the American professional soccer championship. [Análisis de la probabilidad de ganar y de las acciones que conducen al gol en la liga americana de fútbol profesional]

FAM-MDR: a flexible family-based multifactor dimensionality reduction technique to detect epistasis using related individuals

Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma

Letter to the Editor: Stability of Random Forest importance measures

Genetic variation in the TP53 pathway and bladder cancer risk. a comprehensive analysis

A dynamic model for the risk of bladder cancer progression

Global adaptive rank truncated product method for gene-set analysis in association studies

Alteration of five organic compounds by glow discharge plasma and UV light under simulated Mars conditions

Whole Genome Prediction of Bladder Cancer Risk With the Bayesian LASSO

Microbiome compositional data analysis for survival studies

Interval censoring: Model characterizations for the validity of the simplified likelihood

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