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Radial Basis Function circuits using folded cascode differential pairs

2010 53rd IEEE International Midwest Symposium on Circuits and Systems, 2010, p.417-421

2010

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High-throughput determination of RNA structures

Nature reviews. Genetics, 2018-10, Vol.19 (10), p.615-634

2018

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Programming cell-free biosensors with DNA strand displacement circuits

Nature chemical biology, 2022-04, Vol.18 (4), p.385-393

2022

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Cotranscriptional folding of a riboswitch at nucleotide resolution

Nature structural & molecular biology, 2016-12, Vol.23 (12), p.1124-1131

2016

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Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates

Molecular cell, 2021-02, Vol.81 (4), p.870-883.e10

2021

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The effect of pseudoknot base pairing on cotranscriptional structural switching of the fluoride riboswitch

Nucleic acids research, 2024-05, Vol.52 (8), p.4466-4482

2024

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Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch

Nucleic acids research, 2022-11, Vol.50 (21), p.12001-12018

2022

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Deconstructing synthetic biology across scales: a conceptual approach for training synthetic biologists

Nature communications, 2024-06, Vol.15 (1), p.5425-14, Article 5425

2024

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Achieving large dynamic range control of gene expression with a compact RNA transcription-translation regulator

Nucleic acids research, 2017-05, Vol.45 (9), p.5614-5624

2017

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How does RNA fold dynamically?

Journal of molecular biology, 2022-09, Vol.434 (18), p.167665-167665, Article 167665

2022

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A transient intermediate RNA structure underlies the regulatory function of the E. coli thiB TPP translational riboswitch

RNA (Cambridge), 2023-11, Vol.29 (11), p.1658-1672

2023

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Zur and zinc increase expression of E. coli ribosomal protein L31 through RNA-mediated repression of the repressor L31p

Nucleic acids research, 2022-12, Vol.50 (22), p.12739-12753

2022

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PLANT-Dx: A Molecular Diagnostic for Point-of-Use Detection of Plant Pathogens

ACS synthetic biology, 2019-04, Vol.8 (4), p.902-905

2019

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Characterizing and prototyping genetic networks with cell-free transcription–translation reactions

Methods (San Diego, Calif.), 2015-09, Vol.86, p.60-72

2015

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Tracking RNA structures as RNAs transit through the cell

Nature structural & molecular biology, 2019-04, Vol.26 (4), p.256-257

2019

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Characterizing RNA structures in vitro and in vivo with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

Methods (San Diego, Calif.), 2016-07, Vol.103, p.34-48

2016

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DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data

Bioinformatics (Oxford, England), 2019-12, Vol.35 (24), p.5103-5112

2019

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Combined Angiotensin Inhibition for the Treatment of Diabetic Nephropathy

The New England journal of medicine, 2013-11, Vol.369 (20), p.1892-1903

2013

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RNA Engineering for Public Health: Innovations in RNA-Based Diagnostics and Therapeutics

Annual review of chemical and biomolecular engineering, 2021-06, Vol.12 (1), p.263-286

2021

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Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems

ACS synthetic biology, 2015-05, Vol.4 (5), p.503-515

2015

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Tribute to Sidney Altman

RNA (Cambridge), 2022-11, Vol.28 (11), p.1393-1429

2022

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Engineering a PbrR-Based Biosensor for Cell-Free Detection of Lead at the Legal Limit

ACS synthetic biology, 2024-09, Vol.13 (9), p.3003-3012

2024

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SnapShot: RNA Structure Probing Technologies

Cell, 2018-10, Vol.175 (2), p.600-600.e1

2018

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At-Home, Cell-Free Synthetic Biology Education Modules for Transcriptional Regulation and Environmental Water Quality Monitoring

ACS synthetic biology, 2023-10, Vol.12 (10), p.2909-2921

2023

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Genetically encoding multiple functionalities into extracellular vesicles for the targeted delivery of biologics to T cells

Nature biomedical engineering, 2024-04, Vol.8 (4), p.397-414

2024

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Radial Basis Function circuits using folded cascode differential pairs

High-throughput determination of RNA structures

Programming cell-free biosensors with DNA strand displacement circuits

Cotranscriptional folding of a riboswitch at nucleotide resolution

Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates

The effect of pseudoknot base pairing on cotranscriptional structural switching of the fluoride riboswitch

Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch

Deconstructing synthetic biology across scales: a conceptual approach for training synthetic biologists

Achieving large dynamic range control of gene expression with a compact RNA transcription-translation regulator

How does RNA fold dynamically?

A transient intermediate RNA structure underlies the regulatory function of the E. coli thiB TPP translational riboswitch

Zur and zinc increase expression of E. coli ribosomal protein L31 through RNA-mediated repression of the repressor L31p

PLANT-Dx: A Molecular Diagnostic for Point-of-Use Detection of Plant Pathogens

Characterizing and prototyping genetic networks with cell-free transcription–translation reactions

Tracking RNA structures as RNAs transit through the cell

Characterizing RNA structures in vitro and in vivo with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data

Combined Angiotensin Inhibition for the Treatment of Diabetic Nephropathy

RNA Engineering for Public Health: Innovations in RNA-Based Diagnostics and Therapeutics

Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems

Tribute to Sidney Altman

Engineering a PbrR-Based Biosensor for Cell-Free Detection of Lead at the Legal Limit

SnapShot: RNA Structure Probing Technologies

At-Home, Cell-Free Synthetic Biology Education Modules for Transcriptional Regulation and Environmental Water Quality Monitoring

Genetically encoding multiple functionalities into extracellular vesicles for the targeted delivery of biologics to T cells

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