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Towards a metagenomics machine learning interpretable model for understanding the transition from adenoma to colorectal cancer

Scientific reports, 2022-01, Vol.12 (1), p.450-450, Article 450

2022

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Real world evidence of calcifediol or vitamin D prescription and mortality rate of COVID-19 in a retrospective cohort of hospitalized Andalusian patients

Scientific reports, 2021-12, Vol.11 (1), p.23380-12, Article 23380

2021

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Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models

BMC bioinformatics, 2019-07, Vol.20 (1), p.370-370, Article 370

2019

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Crosstalk between Metabolite Production and Signaling Activity in Breast Cancer

International journal of molecular sciences, 2023-04, Vol.24 (8), p.7450

2023

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Drug repurposing for COVID-19 using machine learning and mechanistic models of signal transduction circuits related to SARS-CoV-2 infection

Signal transduction and targeted therapy, 2020-12, Vol.5 (1), p.290-290, Article 290

2020

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Functional Profiling of Soft Tissue Sarcoma Using Mechanistic Models

International journal of molecular sciences, 2023-09, Vol.24 (19), p.14732

2023

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The mechanistic functional landscape of retinitis pigmentosa: a machine learning-driven approach to therapeutic target discovery

Journal of translational medicine, 2024-02, Vol.22 (1), p.139-24, Article 139

2024

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SigPrimedNet: A Signaling-Informed Neural Network for scRNA-seq Annotation of Known and Unknown Cell Types

Biology (Basel, Switzerland), 2023-04, Vol.12 (4), p.579

2023

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Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples

Biology direct, 2019-08, Vol.14 (1), p.15-15, Article 15

2019

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Real-world evidence with a retrospective cohort of 15,968 COVID-19 hospitalized patients suggests 21 new effective treatments

Virology journal, 2023-10, Vol.20 (1), p.1-226, Article 226

2023

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Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data

BioData mining, 2022-01, Vol.15 (1), p.1-1, Article 1

2022

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drexml: A command line tool and Python package for drug repurposing

Computational and structural biotechnology journal, 2024-12, Vol.23, p.1129-1143

2024

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An SPM-Enriched Marine Oil Supplement Shifted Microglia Polarization toward M2, Ameliorating Retinal Degeneration in rd10 Mice

Antioxidants, 2022-12, Vol.12 (1), p.98

2022

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Mechanistic modeling of the SARS-CoV-2 disease map

BioData mining, 2021-01, Vol.14 (1), p.5-5, Article 5

2021

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Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data

Computational and structural biotechnology journal, 2021-01, Vol.19, p.2968-2978

2021

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Discovering potential interactions between rare diseases and COVID-19 by combining mechanistic models of viral infection with statistical modeling

Human molecular genetics, 2022-06, Vol.31 (12), p.2078-2089

2022

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SMN1 copy‐number and sequence variant analysis from next‐generation sequencing data

Human mutation, 2020-12, Vol.41 (12), p.2073-2077

2020

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Evidence of the association between increased use of direct oral anticoagulants and a reduction in the rate of atrial fibrillation-related stroke and major bleeding at the population level (2012–2019)

Medicina clinica, 2024-03, Vol.162 (5), p.220-227

2024

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Mutational landscape of risk variants in comorbid depression and obesity: a next-generation sequencing approach

Molecular psychiatry, 2024-05

2024

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Using mechanistic models for the clinical interpretation of complex genomic variation

Scientific reports, 2019-12, Vol.9 (1), p.18937-12, Article 18937

2019

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MamaPred: A new and innovative approach to determine recurrence risk in HR+/HER2- early-stage breast cancer using HTG EdgeSeq technology

Journal of clinical oncology, 2021-05, Vol.39 (15_suppl), p.558-558

2021

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Evidence of the association between increased use of direct oral anticoagulants and a reduction in the rate of atrial fibrillation-related stroke and major bleeding at the population level (2012–2019)

Medicina clínica (English ed.), 2024-03, Vol.162 (5), p.220-227

2024

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Nutraceutical supplementation in inherited retinal dystrophies

Acta ophthalmologica (Oxford, England), 2024-01, Vol.102 (S279), p.n/a

2024

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Towards a metagenomics machine learning interpretable model for understanding the transition from adenoma to colorectal cancer

Real world evidence of calcifediol or vitamin D prescription and mortality rate of COVID-19 in a retrospective cohort of hospitalized Andalusian patients

Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models

Crosstalk between Metabolite Production and Signaling Activity in Breast Cancer

Drug repurposing for COVID-19 using machine learning and mechanistic models of signal transduction circuits related to SARS-CoV-2 infection

Functional Profiling of Soft Tissue Sarcoma Using Mechanistic Models

The mechanistic functional landscape of retinitis pigmentosa: a machine learning-driven approach to therapeutic target discovery

SigPrimedNet: A Signaling-Informed Neural Network for scRNA-seq Annotation of Known and Unknown Cell Types

Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples

Real-world evidence with a retrospective cohort of 15,968 COVID-19 hospitalized patients suggests 21 new effective treatments

Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data

drexml: A command line tool and Python package for drug repurposing

Assessing the Impact of SARS-CoV-2 Lineages and Mutations on Patient Survival

An SPM-Enriched Marine Oil Supplement Shifted Microglia Polarization toward M2, Ameliorating Retinal Degeneration in rd10 Mice

Mechanistic modeling of the SARS-CoV-2 disease map

Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data

Discovering potential interactions between rare diseases and COVID-19 by combining mechanistic models of viral infection with statistical modeling

SMN1 copy‐number and sequence variant analysis from next‐generation sequencing data

Evidence of the association between increased use of direct oral anticoagulants and a reduction in the rate of atrial fibrillation-related stroke and major bleeding at the population level (2012–2019)

Mutational landscape of risk variants in comorbid depression and obesity: a next-generation sequencing approach

Using mechanistic models for the clinical interpretation of complex genomic variation

CSVS, a crowdsourcing database of the Spanish population genetic variability

MamaPred: A new and innovative approach to determine recurrence risk in HR+/HER2- early-stage breast cancer using HTG EdgeSeq technology

Evidence of the association between increased use of direct oral anticoagulants and a reduction in the rate of atrial fibrillation-related stroke and major bleeding at the population level (2012–2019)

Nutraceutical supplementation in inherited retinal dystrophies

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