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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

Nucleic acids research, 2008-09, Vol.36 (16), p.e105

2008

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FastqPuri: high-performance preprocessing of RNA-seq data

BMC bioinformatics, 2019-05, Vol.20 (1), p.226-226, Article 226

2019

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Comparison of gene expression profiles between human and mouse monocyte subsets

Blood, 2010-01, Vol.115 (3), p.e10-e19

2010

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SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

Genome Research, 2007-11, Vol.17 (11), p.1697-1706

2007

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EasyStrata: evaluation and visualization of stratified genome-wide association meta-analysis data

Bioinformatics (Oxford, England), 2015-01, Vol.31 (2), p.259-261

2015

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Transcriptional Profiles of CD133+ and CD133- Glioblastoma-Derived Cancer Stem Cell Lines Suggest Different Cells of Origin

Cancer research (Chicago, Ill.), 2010-03, Vol.70 (5), p.2030-2040

2010

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Lactate-modulated induction of THBS-1 activates transforming growth factor (TGF)-beta2 and migration of glioma cells in vitro

PloS one, 2013-11, Vol.8 (11), p.e78935

2013

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Commonly altered genomic regions in acute myeloid leukemia are enriched for somatic mutations involved in chromatin remodeling and splicing

Blood, 2012-11, Vol.120 (18), p.e83-e92

2012

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LMX1B is Essential for the Maintenance of Differentiated Podocytes in Adult Kidneys

Journal of the American Society of Nephrology, 2013-11, Vol.24 (11), p.1830-1848

2013

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OrderedList—a bioconductor package for detecting similarity in ordered gene lists

Bioinformatics, 2006-09, Vol.22 (18), p.2315-2316

2006

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Gene-expression profiling identifies distinct subclasses of core binding factor acute myeloid leukemia

Blood, 2007-08, Vol.110 (4), p.1291-1300

2007

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ReseqChip: automated integration of multiple local context probe data from the MitoChip array in mitochondrial DNA sequence assembly

BMC bioinformatics, 2009-12, Vol.10 (1), p.440-440, Article 440

2009

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Expression of Late Cell Cycle Genes and an Increased Proliferative Capacity Characterize Very Early Relapse of Childhood Acute Lymphoblastic Leukemia

Clinical cancer research, 2006-08, Vol.12 (15), p.4553-4561

2006

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T cells become licensed in the lung to enter the central nervous system

Nature (London), 2012-08, Vol.488 (7413), p.675-679

2012

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stam--a Bioconductor compliant R package for structured analysis of microarray data

BMC bioinformatics, 2005-08, Vol.6 (1), p.211-211, Article 211

2005

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High-Dimensional Profiling for Computational Diagnosis

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1526, p.205

2017

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Integrative Normalization and Comparative Analysis for Metabolic Fingerprinting by Comprehensive Two-Dimensional Gas Chromatography−Time-of-Flight Mass Spectrometry

Analytical chemistry (Washington), 2009-07, Vol.81 (14), p.5731-5739

2009

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Annotation-based distance measures for patient subgroup discovery in clinical microarray studies

Bioinformatics, 2007-09, Vol.23 (17), p.2256-2264

2007

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Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data

Bioinformatics, 2005-05, Vol.21 (9), p.1971-1978

2005

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Correction: Lactate-Modulated Induction of THBS-1 Activates Transforming Growth Factor (TGF)-beta2 and Migration of Glioma Cells In Vitro

PloS one, 2014-01, Vol.9 (1)

2014

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Computational diagnostics with gene expression profiles

Methods in molecular biology (Clifton, N.J.), 2008, Vol.453, p.281

2008

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Neutrality, Compensation, and Negative Selection during Evolution of B-Cell Development Transcriptomes

Molecular biology and evolution, 2007-12, Vol.24 (12), p.2610-2618

2007

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Integrative Genomics Approaches Identify Novel Disease-Related Genetic Aberrations in Acute Myeloid Leukemia

Blood, 2011-11, Vol.118 (21), p.402-402

2011

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Rewriting Numeric Constraint Satisfaction Problems for Consistency Algorithms

Lecture notes in computer science, 1999, p.486-487

1999

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Comparison of gene expression profiles between human and mouse monocyte subsets

Blood, 2010-01, Vol.115 (3), p.e10-e19

2010

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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

FastqPuri: high-performance preprocessing of RNA-seq data

Comparison of gene expression profiles between human and mouse monocyte subsets

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

EasyStrata: evaluation and visualization of stratified genome-wide association meta-analysis data

Transcriptional Profiles of CD133+ and CD133- Glioblastoma-Derived Cancer Stem Cell Lines Suggest Different Cells of Origin

Lactate-modulated induction of THBS-1 activates transforming growth factor (TGF)-beta2 and migration of glioma cells in vitro

Commonly altered genomic regions in acute myeloid leukemia are enriched for somatic mutations involved in chromatin remodeling and splicing

LMX1B is Essential for the Maintenance of Differentiated Podocytes in Adult Kidneys

OrderedList—a bioconductor package for detecting similarity in ordered gene lists

Gene-expression profiling identifies distinct subclasses of core binding factor acute myeloid leukemia

ReseqChip: automated integration of multiple local context probe data from the MitoChip array in mitochondrial DNA sequence assembly

Expression of Late Cell Cycle Genes and an Increased Proliferative Capacity Characterize Very Early Relapse of Childhood Acute Lymphoblastic Leukemia

T cells become licensed in the lung to enter the central nervous system

stam--a Bioconductor compliant R package for structured analysis of microarray data

High-Dimensional Profiling for Computational Diagnosis

Integrative Normalization and Comparative Analysis for Metabolic Fingerprinting by Comprehensive Two-Dimensional Gas Chromatography−Time-of-Flight Mass Spectrometry

Annotation-based distance measures for patient subgroup discovery in clinical microarray studies

Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data

Correction: Lactate-Modulated Induction of THBS-1 Activates Transforming Growth Factor (TGF)-beta2 and Migration of Glioma Cells In Vitro

Computational diagnostics with gene expression profiles

Neutrality, Compensation, and Negative Selection during Evolution of B-Cell Development Transcriptomes

Integrative Genomics Approaches Identify Novel Disease-Related Genetic Aberrations in Acute Myeloid Leukemia

Rewriting Numeric Constraint Satisfaction Problems for Consistency Algorithms

Comparison of gene expression profiles between human and mouse monocyte subsets

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