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Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella

Journal of clinical microbiology, 2019-02, Vol.57 (2)

2019

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Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein

Microbiology spectrum, 2021-12, Vol.9 (3), p.e0180321

2021

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Whole-Genome Sequencing of Human Clinical Klebsiella pneumoniae Isolates Reveals Misidentification and Misunderstandings of Klebsiella pneumoniae , Klebsiella variicola , and Klebsiella quasipneumoniae

mSphere, 2017-07, Vol.2 (4)

2017

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Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (17), p.E1768-E1776

2014

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Absence of patient-to-patient intrahospital transmission of Staphylococcus aureus as determined by whole-genome sequencing

mBio, 2014-10, Vol.5 (5), p.e01692-e01614

2014

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PBP2a mutations causing high-level Ceftaroline resistance in clinical methicillin-resistant Staphylococcus aureus isolates

Antimicrobial agents and chemotherapy, 2014-11, Vol.58 (11), p.6668-6674

2014

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The Reemergence of Seasonal Respiratory Viruses in Houston, Texas, after Relaxing COVID-19 Restrictions

Microbiology spectrum, 2021-10, Vol.9 (2), p.e0043021-e0043021

2021

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Strategy for Rapid Identification and Antibiotic Susceptibility Testing of Gram-Negative Bacteria Directly Recovered from Positive Blood Cultures Using the Bruker MALDI Biotyper and the BD Phoenix System

Journal of Clinical Microbiology, 2012-07, Vol.50 (7), p.2452-2454

2012

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Identification of point mutations in clinical Staphylococcus aureus strains that produce small-colony variants auxotrophic for menadione

Infection and immunity, 2014-04, Vol.82 (4), p.1600-1605

2014

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Klebsiella pneumoniae clinical isolates with features of both multidrug-resistance and hypervirulence have unexpectedly low virulence

Nature communications, 2023-12, Vol.14 (1), p.7962-7962, Article 7962

2023

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Diagnostic testing and laboratory equity in clinical microbiology

Microbiology spectrum, 2024-08, Vol.12 (8), p.e0122224

2024

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RocA Has Serotype-Specific Gene Regulatory and Pathogenesis Activities in Serotype M28 Group A Streptococcus

Infection and immunity, 2018-11, Vol.86 (11)

2018

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The majority of 9,729 group A streptococcus strains causing disease secrete SpeB cysteine protease: pathogenesis implications

Infection and immunity, 2015-12, Vol.83 (12), p.4750-4758

2015

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A Genomic Day in the Life of a Clinical Microbiology Laboratory

Journal of Clinical Microbiology, 2013-04, Vol.51 (4), p.1272-1277

2013

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Analysis of the Genomics and Mouse Virulence of an Emergent Clone of Streptococcus dysgalactiae Subspecies equisimilis

Microbiology spectrum, 2023-03, Vol.11 (2), p.e0455022-e0455022

2023

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Whole-Genome Sequencing of a Human Clinical Isolate of the Novel Species Klebsiella quasivariicola sp. nov

Genome announcements (Washington, DC), 2017-10, Vol.5 (42)

2017

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The Ongoing Threat of Methicillin-Resistant Staphylococcus aureus

The Journal of infectious diseases, 2020-12, Vol.222 (12), p.1943-1945

Long, S Wesley

2020

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Classification of cervical biopsy free-text diagnoses through linear-classifier based natural language processing

Journal of pathology informatics, 2022-01, Vol.13, p.100123-100123, Article 100123

2022

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Signals of Significantly Increased Vaccine Breakthrough, Decreased Hospitalization Rates, and Less Severe Disease in Patients with Coronavirus Disease 2019 Caused by the Omicron Variant of Severe Acute Respiratory Syndrome Coronavirus 2 in Houston, Texas

The American journal of pathology, 2022-04, Vol.192 (4), p.642-652

2022

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Whole-Genome Sequencing of a Human Clinical Isolate of emm28 Streptococcus pyogenes Causing Necrotizing Fasciitis Acquired Contemporaneously with Hurricane Harvey

Genome announcements (Washington, DC), 2017-11, Vol.5 (45)

2017

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Development and Evaluation of a Novel Protein-Based Assay for Specific Detection of KPC β-Lactamases from Klebsiella pneumoniae Clinical Isolates

mSphere, 2020-01, Vol.5 (1)

2020

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Development and validation of Houston Methodist Variant Viewer version 3: updates to our application for interpretation of next-generation sequencing data

JAMIA open, 2020-07, Vol.3 (2), p.299-305

2020

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Treatment of Coronavirus Disease 2019 (COVID-19) Patients with Convalescent Plasma

The American journal of pathology, 2020-08, Vol.190 (8), p.1680-1690

2020

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Draft Genome Sequence of Candida auris Strain LOM, a Human Clinical Isolate from Greater Metropolitan Houston, Texas

Microbiology resource announcements, 2019-06, Vol.8 (25)

2019

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Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella

Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein

Whole-Genome Sequencing of Human Clinical Klebsiella pneumoniae Isolates Reveals Misidentification and Misunderstandings of Klebsiella pneumoniae , Klebsiella variicola , and Klebsiella quasipneumoniae

Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences

Absence of patient-to-patient intrahospital transmission of Staphylococcus aureus as determined by whole-genome sequencing

PBP2a mutations causing high-level Ceftaroline resistance in clinical methicillin-resistant Staphylococcus aureus isolates

Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area

The Reemergence of Seasonal Respiratory Viruses in Houston, Texas, after Relaxing COVID-19 Restrictions

Strategy for Rapid Identification and Antibiotic Susceptibility Testing of Gram-Negative Bacteria Directly Recovered from Positive Blood Cultures Using the Bruker MALDI Biotyper and the BD Phoenix System

Identification of point mutations in clinical Staphylococcus aureus strains that produce small-colony variants auxotrophic for menadione

Klebsiella pneumoniae clinical isolates with features of both multidrug-resistance and hypervirulence have unexpectedly low virulence

Diagnostic testing and laboratory equity in clinical microbiology

RocA Has Serotype-Specific Gene Regulatory and Pathogenesis Activities in Serotype M28 Group A Streptococcus

The majority of 9,729 group A streptococcus strains causing disease secrete SpeB cysteine protease: pathogenesis implications

A Genomic Day in the Life of a Clinical Microbiology Laboratory

Analysis of the Genomics and Mouse Virulence of an Emergent Clone of Streptococcus dysgalactiae Subspecies equisimilis

Whole-Genome Sequencing of a Human Clinical Isolate of the Novel Species Klebsiella quasivariicola sp. nov

The Ongoing Threat of Methicillin-Resistant Staphylococcus aureus

Classification of cervical biopsy free-text diagnoses through linear-classifier based natural language processing

Signals of Significantly Increased Vaccine Breakthrough, Decreased Hospitalization Rates, and Less Severe Disease in Patients with Coronavirus Disease 2019 Caused by the Omicron Variant of Severe Acute Respiratory Syndrome Coronavirus 2 in Houston, Texas

Whole-Genome Sequencing of a Human Clinical Isolate of emm28 Streptococcus pyogenes Causing Necrotizing Fasciitis Acquired Contemporaneously with Hurricane Harvey

Development and Evaluation of a Novel Protein-Based Assay for Specific Detection of KPC β-Lactamases from Klebsiella pneumoniae Clinical Isolates

Development and validation of Houston Methodist Variant Viewer version 3: updates to our application for interpretation of next-generation sequencing data

Treatment of Coronavirus Disease 2019 (COVID-19) Patients with Convalescent Plasma

Draft Genome Sequence of Candida auris Strain LOM, a Human Clinical Isolate from Greater Metropolitan Houston, Texas

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