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Cell, 2013-06, Vol.153 (6), p.1327-1339
2013
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MIRA: joint regulatory modeling of multimodal expression and chromatin accessibility in single cells
2022
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Cancer cell, 2020-01, Vol.37 (1), p.104-122.e12
- Kurppa, Kari J.
- Liu, Yao
- To, Ciric
- Zhang, Tinghu
- Fan, Mengyang
- Vajdi, Amir
- Knelson, Erik H.
- Xie, Yingtian
- Lim, Klothilda
- Cejas, Paloma
- Portell, Andrew
- Lizotte, Patrick H.
- Ficarro, Scott B.
- Li, Shuai
- Chen, Ting
- Haikala, Heidi M.
- Wang, Haiyun
- Bahcall, Magda
- Gao, Yang
- Shalhout, Sophia
- Boettcher, Steffen
- Shin, Bo Hee
- Thai, Tran
- Wilkens, Margaret K.
- Tillgren, Michelle L.
- Mushajiang, Mierzhati
- Xu, Man
- Choi, Jihyun
- Bertram, Arrien A.
- Ebert, Benjamin L.
- Beroukhim, Rameen
- Bandopadhayay, Pratiti
- Awad, Mark M.
- Gokhale, Prafulla C.
- Kirschmeier, Paul T.
- Marto, Jarrod A.
- Camargo, Fernando D.
- Haq, Rizwan
- Paweletz, Cloud P.
- Wong, Kwok-Kin
- Barbie, David A.
- Long, Henry W.
- Gray, Nathanael S.
- Jänne, Pasi A.
2020
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BMC bioinformatics, 2018-04, Vol.19 (1), p.135-135, Article 135
2018
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Cell, 2018-07, Vol.174 (2), p.422-432.e13
- Takeda, David Y.
- Spisák, Sándor
- Seo, Ji-Heui
- Bell, Connor
- O’Connor, Edward
- Korthauer, Keegan
- Ribli, Dezső
- Csabai, István
- Solymosi, Norbert
- Szállási, Zoltán
- Stillman, David R.
- Cejas, Paloma
- Qiu, Xintao
- Long, Henry W.
- Tisza, Viktória
- Nuzzo, Pier Vitale
- Rohanizadegan, Mersedeh
- Pomerantz, Mark M.
- Hahn, William C.
- Freedman, Matthew L.
2018
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Nature genetics, 2015-11, Vol.47 (11), p.1346-1351
2015
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Science (American Association for the Advancement of Science), 2018-02, Vol.359 (6377), p.770-775
2018
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Nature genetics, 2020-08, Vol.52 (8), p.790-799
- Pomerantz, Mark M
- Qiu, Xintao
- Zhu, Yanyun
- Takeda, David Y
- Pan, Wenting
- Baca, Sylvan C
- Gusev, Alexander
- Korthauer, Keegan D
- Severson, Tesa M
- Ha, Gavin
- Viswanathan, Srinivas R
- Seo, Ji-Heui
- Nguyen, Holly M
- Zhang, Baohui
- Pasaniuc, Bogdan
- Giambartolomei, Claudia
- Alaiwi, Sarah A
- Bell, Connor A
- O'Connor, Edward P
- Chabot, Matthew S
- Stillman, David R
- Lis, Rosina
- Font-Tello, Alba
- Li, Lewyn
- Cejas, Paloma
- Bergman, Andries M
- Sanders, Joyce
- van der Poel, Henk G
- Gayther, Simon A
- Lawrenson, Kate
- Fonseca, Marcos A S
- Reddy, Jessica
- Corona, Rosario I
- Martovetsky, Gleb
- Egan, Brian
- Choueiri, Toni
- Ellis, Leigh
- Garraway, Isla P
- Lee, Gwo-Shu Mary
- Corey, Eva
- Long, Henry W
- Zwart, Wilbert
- Freedman, Matthew L
2020
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Nature (London), 2016-01, Vol.529 (7586), p.413-417
- Shu, Shaokun
- Lin, Charles Y
- He, Housheng Hansen
- Witwicki, Robert M
- Tabassum, Doris P
- Roberts, Justin M
- Janiszewska, Michalina
- Huh, Sung Jin
- Liang, Yi
- Ryan, Jeremy
- Doherty, Ernest
- Mohammed, Hisham
- Guo, Hao
- Stover, Daniel G
- Ekram, Muhammad B
- Brown, Jonathan
- D'Santos, Clive
- Krop, Ian E
- Dillon, Deborah
- McKeown, Michael
- Ott, Christopher
- Qi, Jun
- Ni, Min
- Rao, Prakash K
- Duarte, Melissa
- Wu, Shwu-Yuan
- Chiang, Cheng-Ming
- Anders, Lars
- Young, Richard A
- Winer, Eric
- Letai, Antony
- Barry, William T
- Carroll, Jason S
- Long, Henry
- Brown, Myles
- Liu, X Shirley
- Meyer, Clifford A
- Bradner, James E
- Polyak, Kornelia
2016
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Science (American Association for the Advancement of Science), 2017-01, Vol.355 (6320), p.78-83
2017
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Methods in molecular biology (Clifton, N.J.), 2022, Vol.2458, p.259
2022
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Biochimica et biophysica acta. Reviews on cancer, 2020-01, Vol.1873 (1), p.188333-188333, Article 188333
2020
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International journal of energy research, 2016-03, Vol.40 (4), p.473-496
2016
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Nature communications, 2021-03, Vol.12 (1), p.1979-1979, Article 1979
- Baca, Sylvan C
- Takeda, David Y
- Seo, Ji-Heui
- Hwang, Justin
- Ku, Sheng Yu
- Arafeh, Rand
- Arnoff, Taylor
- Agarwal, Supreet
- Bell, Connor
- O'Connor, Edward
- Qiu, Xintao
- Alaiwi, Sarah Abou
- Corona, Rosario I
- Fonseca, Marcos A S
- Giambartolomei, Claudia
- Cejas, Paloma
- Lim, Klothilda
- He, Monica
- Sheahan, Anjali
- Nassar, Amin
- Berchuck, Jacob E
- Brown, Lisha
- Nguyen, Holly M
- Coleman, Ilsa M
- Kaipainen, Arja
- De Sarkar, Navonil
- Nelson, Peter S
- Morrissey, Colm
- Korthauer, Keegan
- Pomerantz, Mark M
- Ellis, Leigh
- Pasaniuc, Bogdan
- Lawrenson, Kate
- Kelly, Kathleen
- Zoubeidi, Amina
- Hahn, William C
- Beltran, Himisha
- Long, Henry W
- Brown, Myles
- Corey, Eva
- Freedman, Matthew L
2021
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Clinical cancer research, 2019-07, Vol.25 (14), p.4480-4492
- Mazzu, Ying Z
- Armenia, Joshua
- Chakraborty, Goutam
- Yoshikawa, Yuki
- Coggins, Si'Ana A
- Nandakumar, Subhiksha
- Gerke, Travis A
- Pomerantz, Mark M
- Qiu, Xintao
- Zhao, Huiyong
- Atiq, Mohammad
- Khan, Nabeela
- Komura, Kazumasa
- Lee, Gwo-Shu Mary
- Fine, Samson W
- Bell, Connor
- O'Connor, Edward
- Long, Henry W
- Freedman, Matthew L
- Kim, Baek
- Kantoff, Philip W
2019
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Nature communications, 2021-10, Vol.12 (1), p.5775-5775, Article 5775
- Cejas, Paloma
- Xie, Yingtian
- Font-Tello, Alba
- Lim, Klothilda
- Syamala, Sudeepa
- Qiu, Xintao
- Tewari, Alok K
- Shah, Neel
- Nguyen, Holly M
- Patel, Radhika A
- Brown, Lisha
- Coleman, Ilsa
- Hackeng, Wenzel M
- Brosens, Lodewijk
- Dreijerink, Koen M A
- Ellis, Leigh
- Alaiwi, Sarah Abou
- Seo, Ji-Heui
- Baca, Sylvan
- Beltran, Himisha
- Khani, Francesca
- Pomerantz, Mark
- Dall'Agnese, Alessandra
- Crowdis, Jett
- Van Allen, Eliezer M
- Bellmunt, Joaquim
- Morrisey, Colm
- Nelson, Peter S
- DeCaprio, James
- Farago, Anna
- Dyson, Nicholas
- Drapkin, Benjamin
- Liu, X Shirley
- Freedman, Matthew
- Haffner, Michael C
- Corey, Eva
- Brown, Myles
- Long, Henry W
2021
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Nature communications, 2022-05, Vol.13 (1), p.2559-17, Article 2559
- Qiu, Xintao
- Boufaied, Nadia
- Hallal, Tarek
- Feit, Avery
- de Polo, Anna
- Luoma, Adrienne M
- Alahmadi, Walaa
- Larocque, Janie
- Zadra, Giorgia
- Xie, Yingtian
- Gu, Shengqing
- Tang, Qin
- Zhang, Yi
- Syamala, Sudeepa
- Seo, Ji-Heui
- Bell, Connor
- O'Connor, Edward
- Liu, Yang
- Schaeffer, Edward M
- Jeffrey Karnes, R
- Weinmann, Sheila
- Davicioni, Elai
- Morrissey, Colm
- Cejas, Paloma
- Ellis, Leigh
- Loda, Massimo
- Wucherpfennig, Kai W
- Pomerantz, Mark M
- Spratt, Daniel E
- Corey, Eva
- Freedman, Matthew L
- Shirley Liu, X
- Brown, Myles
- Long, Henry W
- Labbé, David P
2022
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Cancer discovery, 2021-06, Vol.11 (6), p.1524-1541
- Gu, Shengqing Stan
- Zhang, Wubing
- Wang, Xiaoqing
- Jiang, Peng
- Traugh, Nicole
- Li, Ziyi
- Meyer, Clifford
- Stewig, Blair
- Xie, Yingtian
- Bu, Xia
- Manos, Michael P
- Font-Tello, Alba
- Gjini, Evisa
- Lako, Ana
- Lim, Klothilda
- Conway, Jake
- Tewari, Alok K
- Zeng, Zexian
- Sahu, Avinash Das
- Tokheim, Collin
- Weirather, Jason L
- Fu, Jingxin
- Zhang, Yi
- Kroger, Benjamin
- Liang, Jin Hua
- Cejas, Paloma
- Freeman, Gordon J
- Rodig, Scott
- Long, Henry W
- Gewurz, Benjamin E
- Hodi, F Stephen
- Brown, Myles
- Liu, X Shirley
2021
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eLife, 2017-09, Vol.6
2017
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Nature protocols, 2023-08, Vol.18 (8), p.2404-2414
2023
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BMC bioinformatics, 2016-10, Vol.17 (1), p.404-404, Article 404
2016
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Genome Biology, 2020-08, Vol.21 (1), p.198-198, Article 198
2020
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Cell reports (Cambridge), 2017-03, Vol.18 (10), p.2359-2372
2017
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Cell, 2021-10, Vol.184 (21), p.5357-5374.e22
2021
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Cancer research (Chicago, Ill.), 2023-01, Vol.83 (2), p.264-284
- Stevens, Laura E
- Peluffo, Guillermo
- Qiu, Xintao
- Temko, Daniel
- Fassl, Anne
- Li, Zheqi
- Trinh, Anne
- Seehawer, Marco
- Jovanović, Bojana
- Alečković, Maša
- Wilde, Callahan M
- Geck, Renee C
- Shu, Shaokun
- Kingston, Natalie L
- Harper, Nicholas W
- Almendro, Vanessa
- Pyke, Alanna L
- Egri, Shawn B
- Papanastasiou, Malvina
- Clement, Kendell
- Zhou, Ningxuan
- Walker, Sarah
- Salas, Jacqueline
- Park, So Yeon
- Frank, David A
- Meissner, Alexander
- Jaffe, Jacob D
- Sicinski, Piotr
- Toker, Alex
- Michor, Franziska
- Long, Henry W
- Overmoyer, Beth A
- Polyak, Kornelia
2023
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