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Enzyme annotation in UniProtKB using Rhea

Bioinformatics, 2020-03, Vol.36 (6), p.1896-1901

2020

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TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

BMC bioinformatics, 2004-10, Vol.5 (1), p.163-163, Article 163

2004

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Updates in Rhea – an expert curated resource of biochemical reactions

Nucleic acids research, 2017-01, Vol.45 (D1), p.D415-D418

2017

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Whole genome analysis of the marine Bacteroidetes‘Gramella forsetii’ reveals adaptations to degradation of polymeric organic matter

Environmental microbiology, 2006-12, Vol.8 (12), p.2201-2213

2006

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Comparative Genome Analysis of Four Magnetotactic Bacteria Reveals a Complex Set of Group-Specific Genes Implicated in Magnetosome Biomineralization and Function

Journal of Bacteriology, 2007-07, Vol.189 (13), p.4899-4910

2007

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Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB

Metabolites, 2021-01, Vol.11 (1), p.48

2021

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JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes

BMC bioinformatics, 2008-04, Vol.9 (1), p.177-177, Article 177

2008

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Clustered Genes Related to Sulfate Respiration in Uncultured Prokaryotes Support the Theory of Their Concomitant Horizontal Transfer

Journal of Bacteriology, 2005-10, Vol.187 (20), p.7126-7137

2005

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Updates in Rhea: SPARQLing biochemical reaction data

Nucleic acids research, 2019-01, Vol.47 (D1), p.D596-D600

2019

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MetaMine--a tool to detect and analyse gene patterns in their environmental context

BMC bioinformatics, 2008-10, Vol.9 (1), p.459-459, Article 459

2008

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Genome and proteome characterization of the psychrophilic Flavobacterium bacteriophage 11b

Extremophiles : life under extreme conditions, 2007-01, Vol.11 (1), p.95-104

2007

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MetaLook: a 3D visualisation software for marine ecological genomics

BMC bioinformatics, 2007-10, Vol.8 (1), p.406-406, Article 406

2007

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Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T

Proteomics (Weinheim), 2008-04, Vol.8 (8), p.1608-1623

2008

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Updates in Rhea--a manually curated resource of biochemical reactions

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D459-D464

2015

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Challenges in the annotation of pseudoenzymes in databases: the UniProtKB approach

The FEBS journal, 2020-10, Vol.287 (19), p.4114-4127

2020

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Updates in Rhea – an expert curated resource of biochemical reactions

Nucleic acids research, 2017-04, p.gkw1299

2017

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Caenorhabditis elegans phosphatase complexes in UniProtKB and Complex Portal

The FEBS journal, 2020-07, Vol.287 (13), p.2664-2684

2020

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Insights into the genomes of archaea mediating the anaerobic oxidation of methane

Environmental microbiology, 2005-12, Vol.7 (12), p.1937-1951

2005

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A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML)

Omics (Larchmont, N.Y.), 2008-06, Vol.12 (2), p.115-121

2008

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Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1

Proteomics (Weinheim), 2008-04, Vol.8 (8), p.1608-1623

2008

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Megx.net--database resources for marine ecological genomics

Nucleic acids research, 2006-01, Vol.34 (Database issue), p.D390-D393

2006

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Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees

International journal of systematic and evolutionary microbiology, 2004-05, Vol.54 (3), p.791-801

2004

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Archaea-like genes for C1-transfer enzymes in Planctomycetes: phylogenetic implications of their unexpected presence in this phylum

Journal of molecular evolution, 2004-11, Vol.59 (5), p.571-586

2004

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Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1 T

Proteomics (Weinheim), 2008-04, Vol.8 (8), p.1608-1623

2008

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Towards the proteome of the marine bacterium Rhodopirellula baltica: Mapping the soluble proteins

Proteomics (Weinheim), 2005-09, Vol.5 (14), p.3654-3671

2005

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Enzyme annotation in UniProtKB using Rhea

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

Updates in Rhea – an expert curated resource of biochemical reactions

Whole genome analysis of the marine Bacteroidetes‘Gramella forsetii’ reveals adaptations to degradation of polymeric organic matter

Comparative Genome Analysis of Four Magnetotactic Bacteria Reveals a Complex Set of Group-Specific Genes Implicated in Magnetosome Biomineralization and Function

Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB

JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes

Clustered Genes Related to Sulfate Respiration in Uncultured Prokaryotes Support the Theory of Their Concomitant Horizontal Transfer

Updates in Rhea: SPARQLing biochemical reaction data

MetaMine--a tool to detect and analyse gene patterns in their environmental context

Genome and proteome characterization of the psychrophilic Flavobacterium bacteriophage 11b

MetaLook: a 3D visualisation software for marine ecological genomics

Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T

Updates in Rhea--a manually curated resource of biochemical reactions

Challenges in the annotation of pseudoenzymes in databases: the UniProtKB approach

Updates in Rhea – an expert curated resource of biochemical reactions

Caenorhabditis elegans phosphatase complexes in UniProtKB and Complex Portal

Insights into the genomes of archaea mediating the anaerobic oxidation of methane

A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML)

Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1

Megx.net--database resources for marine ecological genomics

Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees

Archaea-like genes for C1-transfer enzymes in Planctomycetes: phylogenetic implications of their unexpected presence in this phylum

Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1 T

Towards the proteome of the marine bacterium Rhodopirellula baltica: Mapping the soluble proteins

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