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Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples

Genome Biology, 2022-06, Vol.23 (1), p.141-141, Article 141

2022

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Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing

Scientific data, 2024-08, Vol.11 (1), p.892-13

2024

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Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA

Cell reports methods, 2021-11, Vol.1 (7), p.100106, Article 100106

2021

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Abstract 3607: An evaluation of NGS to identify gene fusions using RNA from FFPE solid tumor samples

Cancer research (Chicago, Ill.), 2016-07, Vol.76 (14_Supplement), p.3607-3607

2016

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Paired matched normal sequencing to accurately identify somatic clonal hematopoiesis mutations (CHm) in solid tumor tissue and plasma specimens

Journal of clinical oncology, 2024-06, Vol.42 (16_suppl), p.3051-3051

2024

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Blood-based assessment of patients with mismatch repair-deficient tumors enrolled in NCI-MATCH Arm Z1D (nivolumab)

Journal of clinical oncology, 2023-06, Vol.41 (16_suppl), p.2560-2560

2023

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Molecular profiling of ctDNA from NCI-MATCH patients enrolled for treatment with mTOR1/2 inhibitor sapanisertib (arm M) and the Hedgehog pathway inhibitor vismodegib (arm T)

Journal of clinical oncology, 2023-06, Vol.41 (16_suppl), p.3047-3047

2023

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Blood-based detection of actionable alterations from NCI-MATCH patients with no tissue results

Journal of clinical oncology, 2022-06, Vol.40 (16_suppl), p.3035-3035

2022

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Development and analytical validation of a 523-gene clinical assay for cell-free DNA

Journal of clinical oncology, 2019-05, Vol.37 (15_suppl), p.3039-3039

2019

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Abstract 3732: Analytical performance of TruSight® Tumor 170 on small nucleotide variations and gene amplifications using DNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor samples

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.3732-3732

2017

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Abstract 565: Analytical performance of TruSight® Tumor 170 in the detection of gene fusions and splice variants using RNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor samples

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.565-565

2017

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Abstract 5354: Evaluation of quantity, quality and performance with the TruSight® Tumor 170 solid tumor profiling assay of nucleic acids extracted from formalin-fixed paraffin-embedded (FFPE) tissue sections

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.5354-5354

2017

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Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

Genome Biology, 2021-04, Vol.22 (1), p.109-23, Article 109

2021

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Abstract 529: SNAQ-SEQ™: Use of synthetic internal standards in conjunction with poisson exact test to call variants in contrived circulating tumor DNA specimens

Cancer research (Chicago, Ill.), 2022-06, Vol.82 (12_Supplement), p.529-529

2022

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Abstract 3624: Development of a comprehensive and highly sensitive next-generation sequencing assay for detection of copy number variations

Cancer research (Chicago, Ill.), 2016-07, Vol.76 (14_Supplement), p.3624-3624

2016

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Graduate Assistantship Experience Promotes Research Foundation for Clinical Practice

Perspectives on augmentative and alternative communication, 1999-02, Vol.8 (1), p.13-14

1999

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Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples

Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing

Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA

Abstract 3607: An evaluation of NGS to identify gene fusions using RNA from FFPE solid tumor samples

Paired matched normal sequencing to accurately identify somatic clonal hematopoiesis mutations (CHm) in solid tumor tissue and plasma specimens

Blood-based assessment of patients with mismatch repair-deficient tumors enrolled in NCI-MATCH Arm Z1D (nivolumab)

Molecular profiling of ctDNA from NCI-MATCH patients enrolled for treatment with mTOR1/2 inhibitor sapanisertib (arm M) and the Hedgehog pathway inhibitor vismodegib (arm T)

Blood-based detection of actionable alterations from NCI-MATCH patients with no tissue results

Development and analytical validation of a 523-gene clinical assay for cell-free DNA

Abstract 3732: Analytical performance of TruSight® Tumor 170 on small nucleotide variations and gene amplifications using DNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor samples

Abstract 565: Analytical performance of TruSight® Tumor 170 in the detection of gene fusions and splice variants using RNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor samples

Abstract 5354: Evaluation of quantity, quality and performance with the TruSight® Tumor 170 solid tumor profiling assay of nucleic acids extracted from formalin-fixed paraffin-embedded (FFPE) tissue sections

Advancing Quality-Control for NGS Measurement of Actionable Mutations in Circulating Tumor DNA

Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

Abstract 529: SNAQ-SEQ™: Use of synthetic internal standards in conjunction with poisson exact test to call variants in contrived circulating tumor DNA specimens

Abstract 3624: Development of a comprehensive and highly sensitive next-generation sequencing assay for detection of copy number variations

Graduate Assistantship Experience Promotes Research Foundation for Clinical Practice

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