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Data-driven model reduction, Wiener projections, and the Koopman-Mori-Zwanzig formalism

Journal of computational physics, 2021-01, Vol.424, p.109864, Article 109864

2021

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The core autophagy protein ATG4B is a potential biomarker and therapeutic target in CML stem/progenitor cells

Blood, 2014-06, Vol.123 (23), p.3622-3634

2014

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Bias-Adjusted Spectral Clustering in Multi-Layer Stochastic Block Models

Journal of the American Statistical Association, 2023-10, Vol.118 (544), p.2433-2445

2023

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Activating efficient phosphorescence from purely organic materials by crystal design

Nature chemistry, 2011-03, Vol.3 (3), p.205-210

2011

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Dynamic and scalable DNA-based information storage

Nature communications, 2020-06, Vol.11 (1), p.1-12, Article 2981

2020

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eSVD-DE: cohort-wide differential expression in single-cell RNA-seq data using exponential-family embeddings

BMC bioinformatics, 2024-03, Vol.25 (1), p.113-30, Article 113

2024

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Preclinical evaluation of FAP-2286 for fibroblast activation protein targeted radionuclide imaging and therapy

European journal of nuclear medicine and molecular imaging, 2022-09, Vol.49 (11), p.3651-3667

2022

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Post‐selection inference for changepoint detection algorithms with application to copy number variation data

Biometrics, 2021-09, Vol.77 (3), p.1037-1049

2021

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Efficient models of cortical activity via local dynamic equilibria and coarse-grained interactions

Proceedings of the National Academy of Sciences - PNAS, 2024-07, Vol.121 (27), p.e2320454121

2024

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Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data

Journal of the American Statistical Association, 2021, Vol.116 (534), p.457-470

2021

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Covariance-Based Sample Selection for Heterogeneous Data: Applications to Gene Expression and Autism Risk Gene Detection

Journal of the American Statistical Association, 2021, Vol.116 (533), p.54-67

2021

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Quantifying common and distinct information in single-cell multimodal data with Tilted Canonical Correlation Analysis

Proceedings of the National Academy of Sciences - PNAS, 2023-08, Vol.120 (32), p.e2303647120-e2303647120

2023

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Rejoinder for "Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data"

Journal of the American Statistical Association, 2021-04, Vol.116 (534), p.478-480

2021

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Systematic mapping of BCL-2 gene dependencies in cancer reveals molecular determinants of BH3 mimetic sensitivity

Nature communications, 2018-08, Vol.9 (1), p.3513-13, Article 3513

2018

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A data-informed mean-field approach to mapping of cortical parameter landscapes

PLoS computational biology, 2021-12, Vol.17 (12), p.e1009718

2021

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Point-of-care diagnostics for noncommunicable diseases using synthetic urinary biomarkers and paper microfluidics

Proceedings of the National Academy of Sciences - PNAS, 2014-03, Vol.111 (10), p.3671-3676

2014

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A Randomized, Phase III Trial to Evaluate Rucaparib Monotherapy as Maintenance Treatment in Patients With Newly Diagnosed Ovarian Cancer (ATHENA-MONO/GOG-3020/ENGOT-ov45)

Journal of clinical oncology, 2022-12, Vol.40 (34), p.3952-3964

2022

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Vertical suppression of the EGFR pathway prevents onset of resistance in colorectal cancers

Nature communications, 2015-09, Vol.6 (1), p.8305-8305, Article 8305

2015

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Unsupervised Deep Learning of Compact Binary Descriptors

IEEE transactions on pattern analysis and machine intelligence, 2019-06, Vol.41 (6), p.1501-1514

2019

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MicroRNA-141 suppresses prostate cancer stem cells and metastasis by targeting a cohort of pro-metastasis genes

Nature communications, 2017-01, Vol.8 (1), p.14270-14, Article 14270

2017

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Targeting Alzheimer’s Disease: The Critical Crosstalk between the Liver and Brain

Nutrients, 2022-10, Vol.14 (20), p.4298

2022

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Executioner caspases restrict mitochondrial RNA-driven Type I IFN induction during chemotherapy-induced apoptosis

Nature communications, 2023-03, Vol.14 (1), p.1399-1399, Article 1399

2023

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Rucaparib in relapsed, platinum-sensitive high-grade ovarian carcinoma (ARIEL2 Part 1): an international, multicentre, open-label, phase 2 trial

The lancet oncology, 2017, Vol.18 (1), p.75-87

2017

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Data-driven model reduction, Wiener projections, and the Koopman-Mori-Zwanzig formalism

The core autophagy protein ATG4B is a potential biomarker and therapeutic target in CML stem/progenitor cells

Bias-Adjusted Spectral Clustering in Multi-Layer Stochastic Block Models

Activating efficient phosphorescence from purely organic materials by crystal design

Dynamic and scalable DNA-based information storage

eSVD-DE: cohort-wide differential expression in single-cell RNA-seq data using exponential-family embeddings

Preclinical evaluation of FAP-2286 for fibroblast activation protein targeted radionuclide imaging and therapy

Post‐selection inference for changepoint detection algorithms with application to copy number variation data

Efficient models of cortical activity via local dynamic equilibria and coarse-grained interactions

Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data

Covariance-Based Sample Selection for Heterogeneous Data: Applications to Gene Expression and Autism Risk Gene Detection

Quantifying common and distinct information in single-cell multimodal data with Tilted Canonical Correlation Analysis

Rejoinder for "Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data"

Systematic mapping of BCL-2 gene dependencies in cancer reveals molecular determinants of BH3 mimetic sensitivity

Rucaparib versus standard-of-care chemotherapy in patients with relapsed ovarian cancer and a deleterious BRCA1 or BRCA2 mutation (ARIEL4): an international, open-label, randomised, phase 3 trial

A data-informed mean-field approach to mapping of cortical parameter landscapes

Point-of-care diagnostics for noncommunicable diseases using synthetic urinary biomarkers and paper microfluidics

A Randomized, Phase III Trial to Evaluate Rucaparib Monotherapy as Maintenance Treatment in Patients With Newly Diagnosed Ovarian Cancer (ATHENA-MONO/GOG-3020/ENGOT-ov45)

Vertical suppression of the EGFR pathway prevents onset of resistance in colorectal cancers

Unsupervised Deep Learning of Compact Binary Descriptors

MicroRNA-141 suppresses prostate cancer stem cells and metastasis by targeting a cohort of pro-metastasis genes

Targeting Alzheimer’s Disease: The Critical Crosstalk between the Liver and Brain

Molecular and clinical determinants of response and resistance to rucaparib for recurrent ovarian cancer treatment in ARIEL2 (Parts 1 and 2)

Executioner caspases restrict mitochondrial RNA-driven Type I IFN induction during chemotherapy-induced apoptosis

Rucaparib in relapsed, platinum-sensitive high-grade ovarian carcinoma (ARIEL2 Part 1): an international, multicentre, open-label, phase 2 trial

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