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Early life dynamics of the human gut virome and bacterial microbiome in infants

Nature medicine, 2015-10, Vol.21 (10), p.1228-1234

2015

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The Bacterial Microbiome and Virome Milestones of Infant Development

Trends in microbiology (Regular ed.), 2016-10, Vol.24 (10), p.801-810

2016

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Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome

Cell host & microbe, 2016-03, Vol.19 (3), p.311-322

2016

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Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

Microbiome, 2018-05, Vol.6 (1), p.87-87, Article 87

2018

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The Ability of Primate Lentiviruses to Degrade the Monocyte Restriction Factor SAMHD1 Preceded the Birth of the Viral Accessory Protein Vpx

Cell host & microbe, 2012-02, Vol.11 (2), p.194-204

2012

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VirusSeeker, a computational pipeline for virus discovery and virome composition analysis

Virology (New York, N.Y.), 2017-03, Vol.503, p.21-30

2017

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Identification of MW Polyomavirus, a Novel Polyomavirus in Human Stool

Journal of Virology, 2012-10, Vol.86 (19), p.10321-10326

2012

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Ancient Adaptive Evolution of Tetherin Shaped the Functions of Vpu and Nef in Human Immunodeficiency Virus and Primate Lentiviruses

Journal of Virology, 2010-07, Vol.84 (14), p.7124-7134

2010

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Genomic Sequencing Surveillance to Identify Respiratory Syncytial Virus Mutations, Arizona, USA

Emerging infectious diseases, 2023-11, Vol.29 (11), p.2380-2382

2023

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Discordant transmission of bacteria and viruses from mothers to babies at birth

Microbiome, 2019-12, Vol.7 (1), p.156-156, Article 156

2019

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University-Associated SARS-CoV-2 Omicron BA.2 Infections, Maricopa County, Arizona, USA, 2022

Emerging infectious diseases, 2022-07, Vol.28 (7), p.1520-1522

2022

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Characterization of BK Polyomaviruses from Kidney Transplant Recipients Suggests a Role for APOBEC3 in Driving In-Host Virus Evolution

Cell host & microbe, 2018-05, Vol.23 (5), p.628-635.e7

2018

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Genomic Sequencing of SARS-CoV-2 E484K Variant B.1.243.1, Arizona, USA

Emerging infectious diseases, 2021-10, Vol.27 (10), p.2718-2720

2021

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One health genomic surveillance and response to a university-based outbreak of the SARS-CoV-2 Delta AY.25 lineage, Arizona, 2021

PloS one, 2022-10, Vol.17 (10), p.e0272830-e0272830

2022

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Gut DNA Virome Diversity and Its Association with Host Bacteria Regulate Inflammatory Phenotype and Neuronal Immunotoxicity in Experimental Gulf War Illness

Viruses, 2019-10, Vol.11 (10), p.968

2019

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HIV and SARS-CoV-2 infection in postpartum Kenyan women and their infants

PloS one, 2023-01, Vol.18 (1), p.e0278675-e0278675

2023

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Longitudinal alterations in the urinary virome of kidney transplant recipients are influenced by BK viremia and patient sex

Microbiology spectrum, 2024-08, Vol.12 (8), p.e0405523

2024

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SARS-CoV-2 Delta Variant N Gene Mutations Reduce Sensitivity to the TaqPath COVID-19 Multiplex Molecular Diagnostic Assay

Viruses, 2022-06, Vol.14 (6), p.1316

2022

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Influenza Virus Genomic Surveillance, Arizona, USA, 2023-2024

Viruses, 2024-04, Vol.16 (5), p.692

2024

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SV40 Large T Antigen Is Not Responsible for the Loss of STING in 293T Cells but Can Inhibit cGAS-STING Interferon Induction

Viruses, 2020-01, Vol.12 (2), p.137

2020

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Endogenization of a Prosimian Retrovirus during Lemur Evolution

Viruses, 2021-02, Vol.13 (3), p.383

2021

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Digital PCR Discriminates between SARS-CoV-2 Omicron Variants and Immune Escape Mutations

Microbiology spectrum, 2023-08, Vol.11 (4), p.e0525822-e0525822

2023

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Cervicovaginal DNA Virome Alterations Are Associated with Genital Inflammation and Microbiota Composition

mSystems, 2022-04, Vol.7 (2), p.e0006422-e0006422

2022

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Early life dynamics of the human gut virome and bacterial microbiome in infants

The Bacterial Microbiome and Virome Milestones of Infant Development

Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome

Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

The Ability of Primate Lentiviruses to Degrade the Monocyte Restriction Factor SAMHD1 Preceded the Birth of the Viral Accessory Protein Vpx

VirusSeeker, a computational pipeline for virus discovery and virome composition analysis

Identification of MW Polyomavirus, a Novel Polyomavirus in Human Stool

Ancient Adaptive Evolution of Tetherin Shaped the Functions of Vpu and Nef in Human Immunodeficiency Virus and Primate Lentiviruses

Genomic Sequencing Surveillance to Identify Respiratory Syncytial Virus Mutations, Arizona, USA

Discordant transmission of bacteria and viruses from mothers to babies at birth

University-Associated SARS-CoV-2 Omicron BA.2 Infections, Maricopa County, Arizona, USA, 2022

Characterization of BK Polyomaviruses from Kidney Transplant Recipients Suggests a Role for APOBEC3 in Driving In-Host Virus Evolution

Genomic Sequencing of SARS-CoV-2 E484K Variant B.1.243.1, Arizona, USA

One health genomic surveillance and response to a university-based outbreak of the SARS-CoV-2 Delta AY.25 lineage, Arizona, 2021

Gut DNA Virome Diversity and Its Association with Host Bacteria Regulate Inflammatory Phenotype and Neuronal Immunotoxicity in Experimental Gulf War Illness

HIV and SARS-CoV-2 infection in postpartum Kenyan women and their infants

Longitudinal alterations in the urinary virome of kidney transplant recipients are influenced by BK viremia and patient sex

SARS-CoV-2 Delta Variant N Gene Mutations Reduce Sensitivity to the TaqPath COVID-19 Multiplex Molecular Diagnostic Assay

Influenza Virus Genomic Surveillance, Arizona, USA, 2023-2024

SV40 Large T Antigen Is Not Responsible for the Loss of STING in 293T Cells but Can Inhibit cGAS-STING Interferon Induction

Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

Endogenization of a Prosimian Retrovirus during Lemur Evolution

Digital PCR Discriminates between SARS-CoV-2 Omicron Variants and Immune Escape Mutations

Cervicovaginal DNA Virome Alterations Are Associated with Genital Inflammation and Microbiota Composition

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