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A parameter-efficient deep learning approach to predict conversion from mild cognitive impairment to Alzheimer's disease

NeuroImage (Orlando, Fla.), 2019-04, Vol.189, p.276-287

2019

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Parapred: antibody paratope prediction using convolutional and recurrent neural networks

Bioinformatics, 2018-09, Vol.34 (17), p.2944-2950

2018

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Dynamic survival prediction in intensive care units from heterogeneous time series without the need for variable selection or curation

Scientific reports, 2020-12, Vol.10 (1), p.22129-22129, Article 22129

2020

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Multi -omics and metabolic modelling pipelines: Challenges and tools for systems microbiology

Microbiological research, 2015-02, Vol.171, p.52-64

2015

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Logic Explained Networks

Artificial intelligence, 2023-01, Vol.314, p.103822, Article 103822

2023

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MF-PCBA: Multifidelity High-Throughput Screening Benchmarks for Drug Discovery and Machine Learning

Journal of chemical information and modeling, 2023-05, Vol.63 (9), p.2667-2678

2023

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Network-based analysis of comorbidities risk during an infection: SARS and HIV case studies

BMC bioinformatics, 2014-10, Vol.15 (1), p.333-333, Article 333

2014

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From Infection to Immunity: Understanding the Response to SARS-CoV2 Through In-Silico Modeling

Frontiers in immunology, 2021-09, Vol.12, p.646972-646972

2021

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How to integrate wet lab and bioinformatics procedures for wine DNA admixture analysis and compositional profiling: Case studies and perspectives

PloS one, 2019-02, Vol.14 (2), p.e0211962-e0211962

2019

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Variational Autoencoders for Cancer Data Integration: Design Principles and Computational Practice

Frontiers in genetics, 2019-12, Vol.10, p.1205-1205

2019

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Analysis of single-cell RNA sequencing data based on autoencoders

BMC bioinformatics, 2021-06, Vol.22 (1), p.309-309, Article 309

2021

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Adversarial generation of gene expression data

Bioinformatics (Oxford, England), 2022-01, Vol.38 (3), p.730-737

2022

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Collective human mobility pattern from taxi trips in urban area

PloS one, 2012-04, Vol.7 (4), p.e34487-e34487

2012

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Unsupervised generative and graph representation learning for modelling cell differentiation

Scientific reports, 2020-06, Vol.10 (1), p.9790-9790, Article 9790

2020

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CellVGAE: an unsupervised scRNA-seq analysis workflow with graph attention networks

Bioinformatics (Oxford, England), 2022-02, Vol.38 (5), p.1277-1286

2022

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Pathogenetic profiling of COVID-19 and SARS-like viruses

Briefings in bioinformatics, 2021-03, Vol.22 (2), p.1175-1196

2021

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The Impact of Heterogeneity and Awareness in Modeling Epidemic Spreading on Multiplex Networks

Scientific reports, 2016-11, Vol.6 (1), p.37105-37105, Article 37105

2016

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Graph Rewiring and Preprocessing for Graph Neural Networks Based on Effective Resistance

IEEE transactions on knowledge and data engineering, 2024-11, Vol.36 (11), p.6330-6343

2024

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Towards real-time community detection in large networks

Physical review. E, Statistical, nonlinear, and soft matter physics, 2009-06, Vol.79 (6 Pt 2), p.066107-066107, Article 066107

2009

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Advantages of using graph databases to explore chromatin conformation capture experiments

BMC bioinformatics, 2021-04, Vol.22 (Suppl 2), p.43-43, Article 43

2021

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CytoCom: a Cytoscape app to visualize, query and analyse disease comorbidity networks

Bioinformatics, 2015-03, Vol.31 (6), p.969-971

2015

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Immunoinformatics design of multivalent epitope vaccine against monkeypox virus and its variants using membrane-bound, enveloped, and extracellular proteins as targets

Frontiers in immunology, 2023-01, Vol.14, p.1091941-1091941

2023

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A machine learning model to identify early stage symptoms of SARS-Cov-2 infected patients

Expert systems with applications, 2020-12, Vol.160, p.113661-113661, Article 113661

2020

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Adaptive multi-scale Graph Neural Architecture Search framework

Neurocomputing (Amsterdam), 2024-09, Vol.599, p.128094, Article 128094

2024

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Community structure in social networks: applications for epidemiological modelling

PloS one, 2011-07, Vol.6 (7), p.e22220-e22220

2011

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A parameter-efficient deep learning approach to predict conversion from mild cognitive impairment to Alzheimer's disease

Parapred: antibody paratope prediction using convolutional and recurrent neural networks

Dynamic survival prediction in intensive care units from heterogeneous time series without the need for variable selection or curation

Multi -omics and metabolic modelling pipelines: Challenges and tools for systems microbiology

Logic Explained Networks

MF-PCBA: Multifidelity High-Throughput Screening Benchmarks for Drug Discovery and Machine Learning

Network-based analysis of comorbidities risk during an infection: SARS and HIV case studies

From Infection to Immunity: Understanding the Response to SARS-CoV2 Through In-Silico Modeling

How to integrate wet lab and bioinformatics procedures for wine DNA admixture analysis and compositional profiling: Case studies and perspectives

Variational Autoencoders for Cancer Data Integration: Design Principles and Computational Practice

Analysis of single-cell RNA sequencing data based on autoencoders

Adversarial generation of gene expression data

Collective human mobility pattern from taxi trips in urban area

Unsupervised generative and graph representation learning for modelling cell differentiation

CellVGAE: an unsupervised scRNA-seq analysis workflow with graph attention networks

Pathogenetic profiling of COVID-19 and SARS-like viruses

The Impact of Heterogeneity and Awareness in Modeling Epidemic Spreading on Multiplex Networks

Graph Rewiring and Preprocessing for Graph Neural Networks Based on Effective Resistance

Towards real-time community detection in large networks

Advantages of using graph databases to explore chromatin conformation capture experiments

CytoCom: a Cytoscape app to visualize, query and analyse disease comorbidity networks

Immunoinformatics design of multivalent epitope vaccine against monkeypox virus and its variants using membrane-bound, enveloped, and extracellular proteins as targets

A machine learning model to identify early stage symptoms of SARS-Cov-2 infected patients

Adaptive multi-scale Graph Neural Architecture Search framework

Community structure in social networks: applications for epidemiological modelling

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