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TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository

Journal of translational medicine, 2021-06, Vol.19 (1), p.1-269, Article 269

2021

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Discovery of pathway-independent protein signatures associated with clinical outcome in human cancer cohorts

Scientific reports, 2022-11, Vol.12 (1), p.19283-19283, Article 19283

2022

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The NCI Transcriptional Pharmacodynamics Workbench: A Tool to Examine Dynamic Expression Profiling of Therapeutic Response in the NCI-60 Cell Line Panel

Cancer research (Chicago, Ill.), 2018-12, Vol.78 (24), p.6807-6817

2018

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Revisiting Concurrent Radiation Therapy, Temozolomide, and the Histone Deacetylase Inhibitor Valproic Acid for Patients with Glioblastoma-Proteomic Alteration and Comparison Analysis with the Standard-of-Care Chemoirradiation

Biomolecules (Basel, Switzerland), 2023-10, Vol.13 (10), p.1499

2023

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Analysis of Gene Expression Data Using BRB-Array Tools

Cancer informatics, 2007-01, Vol.3, p.117693510700300-17

2007

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Ultraviolet and near-infrared Raman spectroscopy of graphitic C3N4 phase

Chemical physics letters, 2009-04, Vol.472 (1-3), p.69-73

2009

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Quantum Chemistry Study on Internal Conversion of Diphenyldibenzofulvene in Solid Phase

The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2011-12, Vol.115 (50), p.14531-14538

2011

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OpenGeneMed: a portable, flexible and customizable informatics hub for the coordination of next-generation sequencing studies in support of precision medicine trials

Briefings in bioinformatics, 2017-09, Vol.18 (5), p.723-734

2017

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A Model Study on Molecular Properties and Mechanistic Investigations of P=C=E14 Molecules

European journal of inorganic chemistry, 2015-04, Vol.2015 (10), p.1795-1803

2015

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Formation of the high pressure graphite and BC8 phases in a cold compression experiment by Raman scattering

Journal of Raman spectroscopy, 2013-11, Vol.44 (11), p.1596-1602

2013

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TPWshiny: an interactive R/Shiny app to explore cell line transcriptional responses to anti-cancer drugs

Bioinformatics, 2022-01, Vol.38 (2), p.570-572

2022

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An investigation of two multivariate permutation methods for controlling the false discovery proportion

Statistics in medicine, 2007-10, Vol.26 (24), p.4428-4440

2007

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Using cross-validation to evaluate predictive accuracy of survival risk classifiers based on high-dimensional data

Briefings in bioinformatics, 2011-05, Vol.12 (3), p.203-214

2011

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Laser generation and detection of longitudinal and shear acoustic waves in a diamond anvil cell

Applied physics letters, 2008-11, Vol.93 (18), p.181905-1/181905-3

2008

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Histological staining methods preparatory to laser capture microdissection significantly affect the integrity of the cellular RNA

BMC genomics, 2006-04, Vol.7 (1), p.97-97, Article 97

2006

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GeneMed: An Informatics Hub for the Coordination of Next-Generation Sequencing Studies that Support Precision Oncology Clinical Trials

Cancer Informatics, 2015-01, Vol.2015 (Suppl. 2), p.45-55

2015

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Theoretical Designs for Fullerene Carbenes, C60–E–C60 and C70–E–C70 (E = Group 14 Elements): A Target for Experimental Studies

Journal of physical chemistry. C, 2015-06

2015

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Doubly Bonded E13P and BE15 Molecules and Their Reactions with H2, Acetonitrile, Benzophenone, and 2,3-Dimethylbutadiene

Inorganic chemistry, 2015-06, Vol.54 (11), p.5154-5161

2015

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An adaptive method for cDNA microarray normalization

BMC bioinformatics, 2005-02, Vol.6 (1), p.28-28, Article 28

2005

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The addition reactions between N-heterocyclic carbenes and fullerenes (C60 and C70): a density functional study

Theoretical chemistry accounts, 2015-03, Vol.134 (3), Article 38

2015

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Impacts of Predictive Genomic Classifier Performance on Subpopulation-Specific Treatment Effects Assessment

Statistics in biosciences, 2016-06, Vol.8 (1), p.129-158

2016

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Geophysical Well Log Study on the Paleoenvironment of the Hydrocarbon Producing Zones in the Erchungchi Formation, Hsinyin, SW Taiwan

TAO : Terrestrial, atmospheric, and oceanic sciences, 2005-08, Vol.16 (3), p.531

2005

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Identification of an integrated SV40 T/t-antigen cancer signature in aggressive human breast, prostate, and lung carcinomas with poor prognosis

Cancer research (Chicago, Ill.), 2007-09, Vol.67 (17), p.8065-8080

2007

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Raman spectroscopic investigation on Jarosite–Yavapaiite stability

Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy, 2010, Vol.75 (1), p.162-171

2010

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TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository

Discovery of pathway-independent protein signatures associated with clinical outcome in human cancer cohorts

The NCI Transcriptional Pharmacodynamics Workbench: A Tool to Examine Dynamic Expression Profiling of Therapeutic Response in the NCI-60 Cell Line Panel

Revisiting Concurrent Radiation Therapy, Temozolomide, and the Histone Deacetylase Inhibitor Valproic Acid for Patients with Glioblastoma-Proteomic Alteration and Comparison Analysis with the Standard-of-Care Chemoirradiation

Analysis of Gene Expression Data Using BRB-Array Tools

Ultraviolet and near-infrared Raman spectroscopy of graphitic C3N4 phase

Quantum Chemistry Study on Internal Conversion of Diphenyldibenzofulvene in Solid Phase

OpenGeneMed: a portable, flexible and customizable informatics hub for the coordination of next-generation sequencing studies in support of precision medicine trials

A Model Study on Molecular Properties and Mechanistic Investigations of P=C=E14 Molecules

Formation of the high pressure graphite and BC8 phases in a cold compression experiment by Raman scattering

TPWshiny: an interactive R/Shiny app to explore cell line transcriptional responses to anti-cancer drugs

An investigation of two multivariate permutation methods for controlling the false discovery proportion

Using cross-validation to evaluate predictive accuracy of survival risk classifiers based on high-dimensional data

Laser generation and detection of longitudinal and shear acoustic waves in a diamond anvil cell

Histological staining methods preparatory to laser capture microdissection significantly affect the integrity of the cellular RNA

GeneMed: An Informatics Hub for the Coordination of Next-Generation Sequencing Studies that Support Precision Oncology Clinical Trials

Theoretical Designs for Fullerene Carbenes, C60–E–C60 and C70–E–C70 (E = Group 14 Elements): A Target for Experimental Studies

Doubly Bonded E13P and BE15 Molecules and Their Reactions with H2, Acetonitrile, Benzophenone, and 2,3-Dimethylbutadiene

An adaptive method for cDNA microarray normalization

The addition reactions between N-heterocyclic carbenes and fullerenes (C60 and C70): a density functional study

Molecular Profiling-Based Assignment of Cancer Therapy (NCI-MPACT): A Randomized Multicenter Phase II Trial

Impacts of Predictive Genomic Classifier Performance on Subpopulation-Specific Treatment Effects Assessment

Geophysical Well Log Study on the Paleoenvironment of the Hydrocarbon Producing Zones in the Erchungchi Formation, Hsinyin, SW Taiwan

Identification of an integrated SV40 T/t-antigen cancer signature in aggressive human breast, prostate, and lung carcinomas with poor prognosis

Raman spectroscopic investigation on Jarosite–Yavapaiite stability

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