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Session 2SDA-Nonequilibrium energetics of biological molecular machines

Biophysical reviews, 2020-04, Vol.12 (2), p.273-274

2020

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Why plants make puzzle cells, and how their shape emerges

eLife, 2018-02, Vol.7

2018

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Rotary catalysis of bovine mitochondrial F₁-ATPase studied by single-molecule experiments

Proceedings of the National Academy of Sciences - PNAS, 2020-01, Vol.117 (3), p.1447-1456

2020

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Shape-aware stochastic neighbor embedding for robust data visualisations

BMC bioinformatics, 2022-11, Vol.23 (1), p.1-477, Article 477

2022

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Heterogeneity and Robustness in Plant Morphogenesis: From Cells to Organs

Annual review of plant biology, 2018-04, Vol.69 (1), p.469-495

2018

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Mechanical Shielding of Rapidly Growing Cells Buffers Growth Heterogeneity and Contributes to Organ Shape Reproducibility

Current biology, 2017-11, Vol.27 (22), p.3468-3479.e4

2017

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Multiscale Complex Network of Protein Conformational Fluctuations in Single-Molecule Time Series

Proceedings of the National Academy of Sciences - PNAS, 2008-01, Vol.105 (2), p.536-541

2008

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Efficiencies of molecular motors: a comprehensible overview

Biophysical reviews, 2020-04, Vol.12 (2), p.419-423

2020

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Effects of non-equilibrium angle fluctuation on F1-ATPase kinetics induced by temperature increase

Physical chemistry chemical physics : PCCP, 2018, Vol.20 (3), p.1872-1880

2018

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Clones of cells switch from reduction to enhancement of size variability in Arabidopsis sepals

Development (Cambridge), 2017-12, Vol.144 (23), p.4398-4405

2017

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Robust organ size requires robust timing of initiation orchestrated by focused auxin and cytokinin signalling

Nature plants, 2020-06, Vol.6 (6), p.686-698

2020

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Dynamic Disorder in Single-Enzyme Experiments: Facts and Artifacts

ACS nano, 2012-01, Vol.6 (1), p.346-354

2012

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Rotary properties of hybrid F1-ATPases consisting of subunits from different species

iScience, 2023-05, Vol.26 (5), p.106626-106626, Article 106626

2023

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Local-heterogeneous responses and transient dynamics of cage breaking and formation in colloidal fluids

The Journal of chemical physics, 2014-09, Vol.141 (10), p.104907-104907

2014

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Spatio-temporal hierarchy in the dynamics of a minimalist protein model

The Journal of chemical physics, 2013-12, Vol.139 (21), p.215101-215101

2013

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Variable Cell Growth Yields Reproducible OrganDevelopment through Spatiotemporal Averaging

Developmental cell, 2016-07, Vol.38 (1), p.15-32

2016

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Non-Markovian properties and multiscale hidden Markovian network buried in single molecule time series

The Journal of chemical physics, 2013-12, Vol.139 (24), p.245101-245101

2013

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New Quantification of Local Transition Heterogeneity of Multiscale Complex Networks Constructed from Single-Molecule Time Series

The journal of physical chemistry. B, 2009-11, Vol.113 (44), p.14732-14741

2009

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Aggregated markov model using time series of single molecule dwell times with minimum excessive information

Physical review letters, 2013-08, Vol.111 (5), p.058301-058301, Article 058301

2013

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Variable Cell Growth Yields Reproducible Organ Development through Spatiotemporal Averaging

Developmental cell, 2016-07, Vol.38 (1), p.15-32

2016

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ATP hydrolysis assists phosphate release and promotes reaction ordering in F1-ATPase

Nature communications, 2015-12, Vol.6 (1), p.10223-10223, Article 10223

2015

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Phase-space reaction network on a multisaddle energy landscape:HCN isomerization

The Journal of chemical physics, 2005-11, Vol.123 (18), p.184301-184301-13

2005

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Anomalous diffusion in folding dynamics of minimalist protein landscape

Physical review letters, 2007-12, Vol.99 (23), p.238103-238103, Article 238103

2007

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Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis

The journal of physical chemistry letters, 2014-09, Vol.5 (18), p.3157-3161

2014

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Extracting Subcellular Fibrillar Alignment with Error Estimation: Application to Microtubules

Biophysical journal, 2016-04, Vol.110 (8), p.1836-1844

2016

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Session 2SDA-Nonequilibrium energetics of biological molecular machines

Why plants make puzzle cells, and how their shape emerges

Rotary catalysis of bovine mitochondrial F₁-ATPase studied by single-molecule experiments

Shape-aware stochastic neighbor embedding for robust data visualisations

Heterogeneity and Robustness in Plant Morphogenesis: From Cells to Organs

Mechanical Shielding of Rapidly Growing Cells Buffers Growth Heterogeneity and Contributes to Organ Shape Reproducibility

Multiscale Complex Network of Protein Conformational Fluctuations in Single-Molecule Time Series

Efficiencies of molecular motors: a comprehensible overview

Effects of non-equilibrium angle fluctuation on F1-ATPase kinetics induced by temperature increase

Clones of cells switch from reduction to enhancement of size variability in Arabidopsis sepals

Robust organ size requires robust timing of initiation orchestrated by focused auxin and cytokinin signalling

Dynamic Disorder in Single-Enzyme Experiments: Facts and Artifacts

Rotary properties of hybrid F1-ATPases consisting of subunits from different species

Local-heterogeneous responses and transient dynamics of cage breaking and formation in colloidal fluids

Spatio-temporal hierarchy in the dynamics of a minimalist protein model

Variable Cell Growth Yields Reproducible OrganDevelopment through Spatiotemporal Averaging

Non-Markovian properties and multiscale hidden Markovian network buried in single molecule time series

New Quantification of Local Transition Heterogeneity of Multiscale Complex Networks Constructed from Single-Molecule Time Series

Aggregated markov model using time series of single molecule dwell times with minimum excessive information

Variable Cell Growth Yields Reproducible Organ Development through Spatiotemporal Averaging

ATP hydrolysis assists phosphate release and promotes reaction ordering in F1-ATPase

Phase-space reaction network on a multisaddle energy landscape:HCN isomerization

Anomalous diffusion in folding dynamics of minimalist protein landscape

Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis

Extracting Subcellular Fibrillar Alignment with Error Estimation: Application to Microtubules

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