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Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting

Molecular cell, 2012-12, Vol.48 (5), p.760-770

2012

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ILC1 Confer Early Host Protection at Initial Sites of Viral Infection

Cell, 2017-11, Vol.171 (4), p.795-808.e12

2017

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A Single miRNA-mRNA Interaction Affects the Immune Response in a Context- and Cell-Type-Specific Manner

Immunity (Cambridge, Mass.), 2015-07, Vol.43 (1), p.52-64

2015

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The effect of cellular context on miR-155-mediated gene regulation in four major immune cell types

Nature immunology, 2018-10, Vol.19 (10), p.1137

2018

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Cancer Immunosurveillance by Tissue-Resident Innate Lymphoid Cells and Innate-like T Cells

Cell, 2016-01, Vol.164 (3), p.365-377

2016

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Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression

Genes & development, 2013-11, Vol.27 (21), p.2380-2396

2013

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GuideScan software for improved single and paired CRISPR guide RNA design

Nature biotechnology, 2017-04, Vol.35 (4), p.347-349

2017

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SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps

PLoS computational biology, 2015-05, Vol.11 (5), p.e1004271-e1004271

2015

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FOXA1 mutations alter pioneering activity, differentiation and prostate cancer phenotypes

Nature (London), 2019-07, Vol.571 (7765), p.408-412

2019

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PI3K pathway regulates ER-dependent transcription in breast cancer through the epigenetic regulator KMT2D

Science (American Association for the Advancement of Science), 2017-03, Vol.355 (6331), p.1324-1330

2017

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CSF-1R inhibition alters macrophage polarization and blocks glioma progression

Nature medicine, 2013-10, Vol.19 (10), p.1264-1272

2013

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Epiphany: predicting Hi-C contact maps from 1D epigenomic signals

Genome Biology, 2023-06, Vol.24 (1), p.134-134, Article 134

2023

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Early enhancer establishment and regulatory locus complexity shape transcriptional programs in hematopoietic differentiation

Nature genetics, 2015-11, Vol.47 (11), p.1249-1259

2015

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Widespread intronic polyadenylation diversifies immune cell transcriptomes

Nature communications, 2018-04, Vol.9 (1), p.1716-16, Article 1716

2018

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FOXA2 Is Required for Enhancer Priming during Pancreatic Differentiation

Cell reports (Cambridge), 2019-07, Vol.28 (2), p.382-393.e7

2019

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Learning to Predict miRNA-mRNA Interactions from AGO CLIP Sequencing and CLASH Data

PLoS computational biology, 2016-07, Vol.12 (7), p.e1005026-e1005026

2016

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BindSpace decodes transcription factor binding signals by large-scale sequence embedding

Nature methods, 2019-09, Vol.16 (9), p.858

2019

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Multitask learning improves prediction of cancer drug sensitivity

Scientific reports, 2016-08, Vol.6 (1), p.31619-31619, Article 31619

2016

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Target mRNA abundance dilutes microRNA and siRNA activity

Molecular systems biology, 2010, Vol.6 (1), p.363-n/a

2010

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Single-Cell Transcriptional Profiling Reveals Signatures of Helper, Effector, and Regulatory MAIT Cells during Homeostasis and Activation

The Journal of immunology (1950), 2022-03, Vol.208 (5), p.1042-1056

2022

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HiC-DC+ enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP

Nature communications, 2021-06, Vol.12 (1), p.3366-11, Article 3366

2021

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Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs

Nature biotechnology, 2009-06, Vol.27 (6), p.549-555

2009

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Cytotoxic innate lymphoid cells sense cancer cell-expressed interleukin-15 to suppress human and murine malignancies

Nature immunology, 2022-06, Vol.23 (6), p.904

2022

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An integrated model for detecting significant chromatin interactions from high-resolution Hi-C data

Nature communications, 2017-05, Vol.8 (1), p.15454-15454, Article 15454

2017

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Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting

ILC1 Confer Early Host Protection at Initial Sites of Viral Infection

A Single miRNA-mRNA Interaction Affects the Immune Response in a Context- and Cell-Type-Specific Manner

The effect of cellular context on miR-155-mediated gene regulation in four major immune cell types

Cancer Immunosurveillance by Tissue-Resident Innate Lymphoid Cells and Innate-like T Cells

Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression

GuideScan software for improved single and paired CRISPR guide RNA design

SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps

FOXA1 mutations alter pioneering activity, differentiation and prostate cancer phenotypes

PI3K pathway regulates ER-dependent transcription in breast cancer through the epigenetic regulator KMT2D

CSF-1R inhibition alters macrophage polarization and blocks glioma progression

Epiphany: predicting Hi-C contact maps from 1D epigenomic signals

Early enhancer establishment and regulatory locus complexity shape transcriptional programs in hematopoietic differentiation

Widespread intronic polyadenylation diversifies immune cell transcriptomes

FOXA2 Is Required for Enhancer Priming during Pancreatic Differentiation

Learning to Predict miRNA-mRNA Interactions from AGO CLIP Sequencing and CLASH Data

BindSpace decodes transcription factor binding signals by large-scale sequence embedding

Multitask learning improves prediction of cancer drug sensitivity

Target mRNA abundance dilutes microRNA and siRNA activity

Single-Cell Transcriptional Profiling Reveals Signatures of Helper, Effector, and Regulatory MAIT Cells during Homeostasis and Activation

HiC-DC+ enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP

Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs

Cytotoxic innate lymphoid cells sense cancer cell-expressed interleukin-15 to suppress human and murine malignancies

An integrated model for detecting significant chromatin interactions from high-resolution Hi-C data

Stage-Specific Human Induced Pluripotent Stem Cells Map the Progression of Myeloid Transformation to Transplantable Leukemia

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