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Bacteria as Emerging Indicators of Soil Condition

Applied and environmental microbiology, 2017-01, Vol.83 (1), p.E02826

2017

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Using soil bacterial communities to predict physico-chemical variables and soil quality

Microbiome, 2020-06, Vol.8 (1), p.79-13, Article 79

2020

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A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations

Marine pollution bulletin, 2018-02, Vol.127, p.97-107

2018

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Microbial river-to-sea continuum: gradients in benthic and planktonic diversity, osmoregulation and nutrient cycling

Microbiome, 2021-09, Vol.9 (1), p.1-190, Article 190

2021

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Phylogenetic Distribution of Plastic-Degrading Microorganisms

mSystems, 2021-01, Vol.6 (1)

2021

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Environmental DNA sampling detects between-habitat variation in soil arthropod communities, but is a poor indicator of fine-scale spatial and seasonal variation

Ecological indicators, 2022-07, Vol.140, p.109040, Article 109040

2022

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Preferential Feeding by the Ciliates Chilodonella and Tetrahymena spp. and Effects of These Protozoa on Bacterial Biofilm Structure and Composition

Applied and Environmental Microbiology, 2011-07, Vol.77 (13), p.4564-4572

2011

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Functional gene composition, diversity and redundancy in microbial stream biofilm communities

PloS one, 2015-04, Vol.10 (4), p.e0123179-e0123179

2015

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Genome Streamlining, Plasticity, and Metabolic Versatility Distinguish Co-occurring Toxic and Nontoxic Cyanobacterial Strains of Microcoleus

mBio, 2021-10, Vol.12 (5), p.e0223521

2021

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Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities

PeerJ (San Francisco, CA), 2017-05, Vol.5, p.e3347-e3347, Article e3347

2017

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Biofilm Bacterial Community Structure in Streams Affected by Acid Mine Drainage

Applied and Environmental Microbiology, 2009-06, Vol.75 (11), p.3455-3460

2009

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Perspectives on the Impact of Sampling Design and Intensity on Soil Microbial Diversity Estimates

Frontiers in microbiology, 2019-08, Vol.10, p.1820-1820

2019

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Bacterial and fungal communities respond differently to varying tillage depth in agricultural soils

PeerJ (San Francisco, CA), 2017-10, Vol.5, p.e3930-e3930, Article e3930

2017

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novel bacterial community index to assess stream ecological health

Freshwater biology, 2015-10, Vol.60 (10), p.1988-2002

2015

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Molecular Characterization of Ciliate Diversity in Stream Biofilms

Applied and Environmental Microbiology, 2008-03, Vol.74 (6), p.1740-1747

2008

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Into the Plastisphere, Where Only the Generalists Thrive: Early Insights in Plastisphere Microbial Community Succession

Frontiers in Marine Science, 2022-05, Vol.9

2022

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Relative Diversity and Community Structure of Ciliates in Stream Biofilms According to Molecular and Microscopy Methods

Applied and Environmental Microbiology, 2009-08, Vol.75 (16), p.5261-5272

2009

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Measuring change in biological communities: multivariate analysis approaches for temporal datasets with low sample size

PeerJ (San Francisco, CA), 2021-04, Vol.9, p.e11096-e11096, Article e11096

2021

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The soil microbiome: An essential, but neglected, component of regenerative agroecosystems

iScience, 2023-02, Vol.26 (2), p.106028-106028, Article 106028

2023

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Soil bacterial community composition is more stable in kiwifruit orchards relative to phyllosphere communities over time

Environmental microbiome, 2023-08, Vol.18 (1), p.1-71, Article 71

2023

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Changes in the analysis of temporal community dynamics data: a 29-year literature review

PeerJ (San Francisco, CA), 2021-04, Vol.9, p.e11250-e11250, Article e11250

2021

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High Dietary Niche Overlap Between Non-native and Native Ant Species in Natural Ecosystems

Environmental entomology, 2021-02, Vol.50 (1), p.86

2021

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Does plastic type matter? Insights into non-indigenous marine larvae recruitment under controlled conditions

PeerJ (San Francisco, CA), 2022-12, Vol.10, p.e14549-e14549, Article e14549

2022

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Geobacter-dominated biofilms used as amperometric BOD sensors

Biochemical engineering journal, 2016-05, Vol.109, p.88-95

2016

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Soil conditions are a more important determinant of microbial community composition and functional potential than neighboring plant diversity

iScience, 2024-06, Vol.27 (6), p.110056-110056, Article 110056

2024

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Bacteria as Emerging Indicators of Soil Condition

Using soil bacterial communities to predict physico-chemical variables and soil quality

A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations

Microbial river-to-sea continuum: gradients in benthic and planktonic diversity, osmoregulation and nutrient cycling

Phylogenetic Distribution of Plastic-Degrading Microorganisms

Environmental DNA sampling detects between-habitat variation in soil arthropod communities, but is a poor indicator of fine-scale spatial and seasonal variation

Preferential Feeding by the Ciliates Chilodonella and Tetrahymena spp. and Effects of These Protozoa on Bacterial Biofilm Structure and Composition

Functional gene composition, diversity and redundancy in microbial stream biofilm communities

Genome Streamlining, Plasticity, and Metabolic Versatility Distinguish Co-occurring Toxic and Nontoxic Cyanobacterial Strains of Microcoleus

Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities

Biofilm Bacterial Community Structure in Streams Affected by Acid Mine Drainage

Perspectives on the Impact of Sampling Design and Intensity on Soil Microbial Diversity Estimates

Bacterial and fungal communities respond differently to varying tillage depth in agricultural soils

novel bacterial community index to assess stream ecological health

Molecular Characterization of Ciliate Diversity in Stream Biofilms

Into the Plastisphere, Where Only the Generalists Thrive: Early Insights in Plastisphere Microbial Community Succession

Relative Diversity and Community Structure of Ciliates in Stream Biofilms According to Molecular and Microscopy Methods

Measuring change in biological communities: multivariate analysis approaches for temporal datasets with low sample size

The soil microbiome: An essential, but neglected, component of regenerative agroecosystems

Soil bacterial community composition is more stable in kiwifruit orchards relative to phyllosphere communities over time

Changes in the analysis of temporal community dynamics data: a 29-year literature review

High Dietary Niche Overlap Between Non-native and Native Ant Species in Natural Ecosystems

Does plastic type matter? Insights into non-indigenous marine larvae recruitment under controlled conditions

Geobacter-dominated biofilms used as amperometric BOD sensors

Soil conditions are a more important determinant of microbial community composition and functional potential than neighboring plant diversity

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