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A tutorial in small molecule identification via electrospray ionization‐mass spectrometry: The practical art of structural elucidation

Mass spectrometry reviews, 2018-09, Vol.37 (5), p.607-629

2018

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A machine-learning based model for automated recommendation of individualized treatment of rifampicin-resistant tuberculosis

PloS one, 2024-09, Vol.19 (9), p.e0306101

2024

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Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence Repertoires

Frontiers in immunology, 2019-11, Vol.10, p.2820-2820

2019

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Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF

Nature communications, 2024-05, Vol.15 (1), p.3956-3956, Article 3956

2024

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Predicting compound-protein interaction using hierarchical graph convolutional networks

PloS one, 2022-07, Vol.17 (7), p.e0258628-e0258628

2022

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Large-scale tandem mass spectrum clustering using fast nearest neighbor searching

Rapid communications in mass spectrometry, 2021-07, p.e9153-e9153

2021

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A new Plasmodium vivax reference genome for South American isolates

BMC genomics, 2023-10, Vol.24 (1), p.606-14, Article 606

2023

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Osmotic stress inhibits leaf growth of Arabidopsis thaliana by enhancing ARF‐mediated auxin responses

The New phytologist, 2020-06, Vol.226 (6), p.1766-1780

2020

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MoMAC: Multi-objective optimization to combine multiple association rules into an interpretable classification

Applied intelligence (Dordrecht, Netherlands), 2022-02, Vol.52 (3), p.3090-3102

2022

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A manually curated network of the PML nuclear body interactome reveals an important role for PML-NBs in SUMOylation dynamics

International journal of biological sciences, 2010-01, Vol.6 (1), p.51-67

2010

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Auranofin reveals therapeutic anticancer potential by triggering distinct molecular cell death mechanisms and innate immunity in mutant p53 non-small cell lung cancer

Redox biology, 2021-06, Vol.42, p.101949-101949, Article 101949

2021

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COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

Nucleic acids research, 2016-01, Vol.44 (D1), p.D620

2016

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Clustering association rules to build beliefs and discover unexpected patterns

Applied intelligence (Dordrecht, Netherlands), 2020-06, Vol.50 (6), p.1943-1954

2020

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Preparation of protein extracts from recalcitrant plant tissues: An evaluation of different methods for two-dimensional gel electrophoresis analysis

Proteomics (Weinheim), 2005-07, Vol.5 (10), p.2497-2507

2005

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Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay

PloS one, 2018-12, Vol.13 (12), p.e0208207-e0208207

2018

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MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

PloS one, 2020-01, Vol.15 (1), p.e0226770-e0226770

2020

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speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification

PLoS computational biology, 2018-03, Vol.14 (3), p.e1006018-e1006018

2018

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Ferroptosis Induction in Multiple Myeloma Cells Triggers DNA Methylation and Histone Modification Changes Associated with Cellular Senescence

International journal of molecular sciences, 2021-11, Vol.22 (22), p.12234

2021

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Transcriptome profiling in blood before and after hepatitis B vaccination shows significant differences in gene expression between responders and non-responders

Vaccine, 2018-10, Vol.36 (42), p.6282-6289

2018

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Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania

PLoS pathogens, 2022-09, Vol.18 (9), p.e1010848-e1010848

2022

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Preexisting memory CD4 T cells in naïve individuals confer robust immunity upon hepatitis B vaccination

eLife, 2022-01, Vol.11

2022

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Getting your peaks in line: a review of alignment methods for NMR spectral data

Metabolites, 2013-04, Vol.3 (2), p.259-276

2013

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Selective whole-genome sequencing of Plasmodium parasites directly from blood samples by nanopore adaptive sampling

mBio, 2024-01, Vol.15 (1), p.e0196723-e0196723

2024

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An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data

BMC bioinformatics, 2011-10, Vol.12 (1), p.405-405, Article 405

2011

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TransExION: a transformer based explainable similarity metric for comparing IONS in tandem mass spectrometry

Journal of cheminformatics, 2024-05, Vol.16 (1), p.61-61, Article 61

2024

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A tutorial in small molecule identification via electrospray ionization‐mass spectrometry: The practical art of structural elucidation

A machine-learning based model for automated recommendation of individualized treatment of rifampicin-resistant tuberculosis

Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence Repertoires

Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF

Predicting compound-protein interaction using hierarchical graph convolutional networks

Large-scale tandem mass spectrum clustering using fast nearest neighbor searching

A new Plasmodium vivax reference genome for South American isolates

Osmotic stress inhibits leaf growth of Arabidopsis thaliana by enhancing ARF‐mediated auxin responses

MoMAC: Multi-objective optimization to combine multiple association rules into an interpretable classification

A manually curated network of the PML nuclear body interactome reveals an important role for PML-NBs in SUMOylation dynamics

Auranofin reveals therapeutic anticancer potential by triggering distinct molecular cell death mechanisms and innate immunity in mutant p53 non-small cell lung cancer

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

Clustering association rules to build beliefs and discover unexpected patterns

Preparation of protein extracts from recalcitrant plant tissues: An evaluation of different methods for two-dimensional gel electrophoresis analysis

Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay

MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification

Ferroptosis Induction in Multiple Myeloma Cells Triggers DNA Methylation and Histone Modification Changes Associated with Cellular Senescence

Transcriptome profiling in blood before and after hepatitis B vaccination shows significant differences in gene expression between responders and non-responders

Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania

Preexisting memory CD4 T cells in naïve individuals confer robust immunity upon hepatitis B vaccination

Getting your peaks in line: a review of alignment methods for NMR spectral data

Selective whole-genome sequencing of Plasmodium parasites directly from blood samples by nanopore adaptive sampling

An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data

TransExION: a transformer based explainable similarity metric for comparing IONS in tandem mass spectrometry

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