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Plasmodium falciparum infection in humans and mosquitoes influence natural Anopheline biting behavior and transmission

Nature communications, 2024-05, Vol.15 (1), p.4626-11, Article 4626

2024

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bistro: An R package for vector bloodmeal identification by short tandem repeat overlap

Methods in ecology and evolution, 2024-02, Vol.15 (2), p.308-316

2024

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Plasmodium falciparum Genetic Diversity in Coincident Human and Mosquito Hosts

mBio, 2022-10, Vol.13 (5), p.e0227722-e0227722

2022

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Patient and Microbial Genomic Factors Associated with Carbapenem-Resistant Klebsiella pneumoniae Extraintestinal Colonization and Infection

mSystems, 2021-03, Vol.6 (2)

2021

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Analytic optimization of Plasmodium falciparum marker gene haplotype recovery from amplicon deep sequencing of complex mixtures

PLOS global public health, 2024, Vol.4 (5), p.e0002361

2024

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Application of Combined Genomic and Transfer Analyses to Identify Factors Mediating Regional Spread of Antibiotic-resistant Bacterial Lineages

Clinical infectious diseases, 2020-12, Vol.71 (10), p.e642-e649

2020

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Integrated genomic and interfacility patient-transfer data reveal the transmission pathways of multidrug-resistant Klebsiella pneumoniae in a regional outbreak

Science translational medicine, 2017-11, Vol.9 (417)

2017

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Genomic Insights into Carbapenem-Resistant Klebsiella pneumoniae Transmission and Adaptation in the Healthcare Environment

Lapp, Zena

2021

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ProQuest

Regional Spread of blaNDM-1-Containing Klebsiella pneumoniae ST147 in Post-Acute Care Facilities

Clinical infectious diseases, 2021-10, Vol.73 (8), p.1431-1439

2021

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Bad Bugs Move Alike: Regional Transmission of Antibiotic-Resistant Organisms

Infection control and hospital epidemiology, 2020-10, Vol.41 (S1), p.s137-s138

2020

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Identification of two novel subtypes of hepatitis C virus genotype 8 and a potential new genotype successfully treated with direct acting antivirals

The Journal of infectious diseases, 2024-05

2024

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Identification of 2 Novel Subtypes of Hepatitis C Virus Genotype 8 and a Potential New Genotype Successfully Treated With Direct Acting Antivirals

The Journal of infectious diseases, 2024-05

2024

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Regional Spread of bla NDM-1-Containing Klebsiella pneumoniae ST147 in Post-Acute Care Facilities

Clinical infectious diseases, 2021-10, Vol.73 (8), p.1431-1439

2021

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Characterization of resistance to newer antimicrobials among carbapenem-resistant Klebsiella pneumoniae in the post–acute-care setting

Infection control and hospital epidemiology, 2023-07, Vol.44 (7), p.1159-1162

2023

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Distinct Origins and Transmission Pathways of bla KPC Enterobacterales across Three U.S. States

Journal of clinical microbiology, 2023-08, Vol.61 (8), p.e0025923

2023

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regentrans: a framework and R package for using genomics to study regional pathogen transmission

Microbial genomics, 2022-01, Vol.8 (1)

2022

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Distinct Origins and Transmission Pathways of blaKPC Enterobacterales across Three U.S. States

Journal of clinical microbiology, 2023-08, Vol.61 (8), p.e0025923-e0025923

2023

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Machine learning models to identify patient and microbial genetic factors associated with carbapenem-resistant Klebsiella pneumoniae infection

Access microbiology, 2020-07, Vol.2 (7A)

2020

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prewas: data pre-processing for more informative bacterial GWAS

Microbial genomics, 2020-05, Vol.6 (5)

2020

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1261. Antimicrobial Susceptibilities of Carbapenem-Resistant Klebsiella pneumoniae (CRKP) Isolates from a Multi-state Network of Long-term Acute Care Hospitals (LTACHs)

Open forum infectious diseases, 2021-12, Vol.8 (Supplement_1), p.S719-S719

2021

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1279. Risk Factors for Colistin Resistance Among Carbapenem-Resistant Klebsiella pneumoniae (CRKP) in a Network of Long-term Acute Care Hospitals (LTACHs)

Open forum infectious diseases, 2021-12, Vol.8 (Supplement_1), p.S727-S728

2021

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Risk Factors for Colistin-Resistant Carbapenem-Resistant Klebsiella pneumoniae in the Postacute Care Setting

Open forum infectious diseases, 2022-09, Vol.9 (9), p.ofac452-ofac452

2022

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Developing and deploying an integrated workshop curriculum teaching computational skills for reproducible research

Journal of Open Source Education, 2022-01, Vol.5 (47), p.144

2022

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mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines

Journal of open source software, 2021-01, Vol.6 (61), p.3073

2021

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Teaching Python for Data Science: Collaborative development of a modular & interactive curriculum

Journal of Open Source Education, 2021-01, Vol.4 (46), p.138

2021

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Plasmodium falciparum infection in humans and mosquitoes influence natural Anopheline biting behavior and transmission

bistro: An R package for vector bloodmeal identification by short tandem repeat overlap

Plasmodium falciparum Genetic Diversity in Coincident Human and Mosquito Hosts

Patient and Microbial Genomic Factors Associated with Carbapenem-Resistant Klebsiella pneumoniae Extraintestinal Colonization and Infection

Analytic optimization of Plasmodium falciparum marker gene haplotype recovery from amplicon deep sequencing of complex mixtures

Application of Combined Genomic and Transfer Analyses to Identify Factors Mediating Regional Spread of Antibiotic-resistant Bacterial Lineages

Integrated genomic and interfacility patient-transfer data reveal the transmission pathways of multidrug-resistant Klebsiella pneumoniae in a regional outbreak

Genomic Insights into Carbapenem-Resistant Klebsiella pneumoniae Transmission and Adaptation in the Healthcare Environment

Regional Spread of blaNDM-1-Containing Klebsiella pneumoniae ST147 in Post-Acute Care Facilities

Bad Bugs Move Alike: Regional Transmission of Antibiotic-Resistant Organisms

Identification of two novel subtypes of hepatitis C virus genotype 8 and a potential new genotype successfully treated with direct acting antivirals

Identification of 2 Novel Subtypes of Hepatitis C Virus Genotype 8 and a Potential New Genotype Successfully Treated With Direct Acting Antivirals

Regional Spread of bla NDM-1-Containing Klebsiella pneumoniae ST147 in Post-Acute Care Facilities

Characterization of resistance to newer antimicrobials among carbapenem-resistant Klebsiella pneumoniae in the post–acute-care setting

Distinct Origins and Transmission Pathways of bla KPC Enterobacterales across Three U.S. States

regentrans: a framework and R package for using genomics to study regional pathogen transmission

Distinct Origins and Transmission Pathways of blaKPC Enterobacterales across Three U.S. States

Machine learning models to identify patient and microbial genetic factors associated with carbapenem-resistant Klebsiella pneumoniae infection

prewas: data pre-processing for more informative bacterial GWAS

1261. Antimicrobial Susceptibilities of Carbapenem-Resistant Klebsiella pneumoniae (CRKP) Isolates from a Multi-state Network of Long-term Acute Care Hospitals (LTACHs)

1279. Risk Factors for Colistin Resistance Among Carbapenem-Resistant Klebsiella pneumoniae (CRKP) in a Network of Long-term Acute Care Hospitals (LTACHs)

Risk Factors for Colistin-Resistant Carbapenem-Resistant Klebsiella pneumoniae in the Postacute Care Setting

Developing and deploying an integrated workshop curriculum teaching computational skills for reproducible research

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines

Teaching Python for Data Science: Collaborative development of a modular & interactive curriculum

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