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On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types

BMC bioinformatics, 2014-04, Vol.15 (1), p.110-110, Article 110

2014

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DNA methylation changes separate allergic patients from healthy controls and may reflect altered CD4+ T-cell population structure

PLoS genetics, 2014-01, Vol.10 (1), p.e1004059-e1004059

2014

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A Comparative Study of Gene Co-Expression Thresholding Algorithms

Journal of computational biology, 2024-06, Vol.31 (6), p.539-548

2024

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A robustness metric for biological data clustering algorithms

BMC bioinformatics, 2019-12, Vol.20 (Suppl 15), p.503-503, Article 503

2019

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The public health exposome: a population-based, exposure science approach to health disparities research

International journal of environmental research and public health, 2014-12, Vol.11 (12), p.12866-12895

2014

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Threshold selection in gene co-expression networks using spectral graph theory techniques

BMC bioinformatics, 2009-10, Vol.10 Suppl 11 (S11), p.S4-S4, Article S4

2009

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Obesity-induced galectin-9 is a therapeutic target in B-cell acute lymphoblastic leukemia

Nature communications, 2022-03, Vol.13 (1), p.1157-1157, Article 1157

2022

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Genetic dissection of acute ethanol responsive gene networks in prefrontal cortex: functional and mechanistic implications

PloS one, 2012-04, Vol.7 (4), p.e33575

2012

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Integration of heterogeneous functional genomics data in gerontology research to find genes and pathway underlying aging across species

PloS one, 2019-04, Vol.14 (4), p.e0214523-e0214523

2019

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Domination based classification algorithms for the controllability analysis of biological interaction networks

Scientific reports, 2022-07, Vol.12 (1), p.11897-11897, Article 11897

2022

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GeneWeaver: a web-based system for integrative functional genomics

Nucleic acids research, 2012-01, Vol.40 (D1), p.D1067-D1076

2012

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Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics

Journal of proteome research, 2006-11, Vol.5 (11), p.2909-2918

2006

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Biclique: an R package for maximal biclique enumeration in bipartite graphs

BMC research notes, 2020-02, Vol.13 (1), p.88-5, Article 88

2020

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A graph theoretical approach to experimental prioritization in genome-scale investigations

Mammalian genome, 2024-08

2024

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The maximum clique enumeration problem: algorithms, applications, and implementations

BMC bioinformatics, 2012-06, Vol.13 Suppl 10 (Suppl 10), p.S5-S5, Article S5

2012

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Seminar: Scalable Preprocessing Tools for Exposomic Data Analysis

Environmental health perspectives, 2023-12, Vol.131 (12), p.124201-124201

2023

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Molecular Subtyping and Outlier Detection in Human Disease Using the Paraclique Algorithm

Algorithms, 2021-02, Vol.14 (2), p.63

2021

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EHR-BERT: A BERT-based model for effective anomaly detection in electronic health records

Journal of biomedical informatics, 2024-02, Vol.150 (1), p.104605-104605, Article 104605

2024

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Activated protein C as a potential therapeutic for modeled COVID-19-induced fibrin accumulation

Journal of critical care, 2024-06, Vol.81, p.154546, Article 154546

2024

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Social determinants and the classification of disease: descriptive epidemiology of selected socially mediated disease constellations

PloS one, 2014-11, Vol.9 (11), p.e110271-e110271

2014

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GeneWeaver: a web-based system for integrative functional genomics

Nucleic acids research, 2012-01, Vol.40 (Database issue), p.D1067

2012

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Detecting anomalous sequences in electronic health records using higher-order tensor networks

Journal of biomedical informatics, 2022-11, Vol.135, p.104219-104219, Article 104219

2022

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GeneWeaver: data driven alignment of cross-species genomics in biology and disease

Nucleic acids research, 2016-01, Vol.44 (D1), p.D555-D559

2016

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Lower bounds on paraclique density

Discrete Applied Mathematics, 2016-05, Vol.204, p.208-212

2016

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MicroRNA Profiling in Adipose Before and After Weight Loss Highlights the Role of miR‐223‐3p and the NLRP3 Inflammasome

Obesity (Silver Spring, Md.), 2020-03, Vol.28 (3), p.570-580

2020

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On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types

DNA methylation changes separate allergic patients from healthy controls and may reflect altered CD4+ T-cell population structure

A Comparative Study of Gene Co-Expression Thresholding Algorithms

A robustness metric for biological data clustering algorithms

The public health exposome: a population-based, exposure science approach to health disparities research

Threshold selection in gene co-expression networks using spectral graph theory techniques

Obesity-induced galectin-9 is a therapeutic target in B-cell acute lymphoblastic leukemia

Genetic dissection of acute ethanol responsive gene networks in prefrontal cortex: functional and mechanistic implications

Integration of heterogeneous functional genomics data in gerontology research to find genes and pathway underlying aging across species

Domination based classification algorithms for the controllability analysis of biological interaction networks

GeneWeaver: a web-based system for integrative functional genomics

Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics

Biclique: an R package for maximal biclique enumeration in bipartite graphs

A graph theoretical approach to experimental prioritization in genome-scale investigations

The maximum clique enumeration problem: algorithms, applications, and implementations

Seminar: Scalable Preprocessing Tools for Exposomic Data Analysis

Molecular Subtyping and Outlier Detection in Human Disease Using the Paraclique Algorithm

EHR-BERT: A BERT-based model for effective anomaly detection in electronic health records

Activated protein C as a potential therapeutic for modeled COVID-19-induced fibrin accumulation

Social determinants and the classification of disease: descriptive epidemiology of selected socially mediated disease constellations

GeneWeaver: a web-based system for integrative functional genomics

Detecting anomalous sequences in electronic health records using higher-order tensor networks

GeneWeaver: data driven alignment of cross-species genomics in biology and disease

Lower bounds on paraclique density

MicroRNA Profiling in Adipose Before and After Weight Loss Highlights the Role of miR‐223‐3p and the NLRP3 Inflammasome

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