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WGCNA: an R package for weighted correlation network analysis

BMC bioinformatics, 2008-12, Vol.9 (1), p.559-559, Article 559

2008

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Fast R Functions for Robust Correlations and Hierarchical Clustering

Journal of statistical software, 2012-03, Vol.46 (11)

2012

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Comparison of co-expression measures: mutual information, correlation, and model based indices

BMC bioinformatics, 2012-12, Vol.13 (1), p.328-328, Article 328

2012

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Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R

Bioinformatics, 2008-03, Vol.24 (5), p.719-720

2008

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Is my network module preserved and reproducible?

PLoS computational biology, 2011-01, Vol.7 (1), p.e1001057-e1001057

2011

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When is hub gene selection better than standard meta-analysis?

PloS one, 2013-04, Vol.8 (4), p.e61505-e61505

2013

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Strategies for aggregating gene expression data: the collapseRows R function

BMC bioinformatics, 2011-08, Vol.12 (1), p.322-322, Article 322

2011

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Elevated TREM2 Gene Dosage Reprograms Microglia Responsivity and Ameliorates Pathological Phenotypes in Alzheimer’s Disease Models

Neuron (Cambridge, Mass.), 2018-03, Vol.97 (5), p.1032-1048.e5

2018

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Functional organization of the transcriptome in human brain

Nature neuroscience, 2008-11, Vol.11 (11), p.1271-1282

2008

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Integrated genomics and proteomics define huntingtin CAG length-dependent networks in mice

Nature neuroscience, 2016-04, Vol.19 (4), p.623-633

2016

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Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects

BMC genomics, 2012-11, Vol.13 (1), p.636-636, Article 636

2012

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Huntington's disease accelerates epigenetic aging of human brain and disrupts DNA methylation levels

Aging (Albany, NY.), 2016-07, Vol.8 (7), p.1485-1512

2016

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Weighted Gene Coexpression Network Analysis: State of the Art

Journal of biopharmaceutical statistics, 2010-03, Vol.20 (2), p.281-300

2010

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DNA methylation study of Huntington’s disease and motor progression in patients and in animal models

Nature communications, 2020-09, Vol.11 (1), p.4529-4529, Article 4529

2020

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MicroRNA signatures of endogenous Huntingtin CAG repeat expansion in mice

PloS one, 2018-01, Vol.13 (1), p.e0190550-e0190550

2018

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Aging effects on DNA methylation modules in human brain and blood tissue

Genome biology, 2012-10, Vol.13 (10), p.R97-R97, Article R97

2012

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Is human blood a good surrogate for brain tissue in transcriptional studies?

BMC genomics, 2010-10, Vol.11 (1), p.589-589, Article 589

2010

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Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients

BMC genomics, 2009-08, Vol.10 (1), p.405-405, Article 405

2009

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Eigengene networks for studying the relationships between co-expression modules

BMC systems biology, 2007-11, Vol.1 (1), p.54-54, Article 54

2007

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Titanium biomaterials with complex surfaces induced aberrant peripheral circadian rhythms in bone marrow mesenchymal stromal cells

PloS one, 2017-08, Vol.12 (8), p.e0183359-e0183359

2017

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Detecting network modules in fMRI time series: A weighted network analysis approach

NeuroImage (Orlando, Fla.), 2010-10, Vol.52 (4), p.1465-1476

2010

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Gene coexpression network topology of cardiac development, hypertrophy, and failure

Circulation. Cardiovascular genetics, 2011-02, Vol.4 (1), p.26-35

2011

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Accelerated aging with HIV begins at the time of initial HIV infection

iScience, 2023-08, Vol.26 (8), p.107381, Article 107381

2023

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Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV

Frontiers in bioinformatics, 2024-05, Vol.4, p.1356509

2024

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Random generalized linear model: a highly accurate and interpretable ensemble predictor

BMC bioinformatics, 2013-01, Vol.14 (1), p.5-5, Article 5

2013

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WGCNA: an R package for weighted correlation network analysis

Fast R Functions for Robust Correlations and Hierarchical Clustering

Comparison of co-expression measures: mutual information, correlation, and model based indices

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R

Is my network module preserved and reproducible?

When is hub gene selection better than standard meta-analysis?

Strategies for aggregating gene expression data: the collapseRows R function

Elevated TREM2 Gene Dosage Reprograms Microglia Responsivity and Ameliorates Pathological Phenotypes in Alzheimer’s Disease Models

Functional organization of the transcriptome in human brain

Integrated genomics and proteomics define huntingtin CAG length-dependent networks in mice

Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects

Huntington's disease accelerates epigenetic aging of human brain and disrupts DNA methylation levels

Weighted Gene Coexpression Network Analysis: State of the Art

DNA methylation study of Huntington’s disease and motor progression in patients and in animal models

MicroRNA signatures of endogenous Huntingtin CAG repeat expansion in mice

Aging effects on DNA methylation modules in human brain and blood tissue

Is human blood a good surrogate for brain tissue in transcriptional studies?

Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients

Eigengene networks for studying the relationships between co-expression modules

Titanium biomaterials with complex surfaces induced aberrant peripheral circadian rhythms in bone marrow mesenchymal stromal cells

Detecting network modules in fMRI time series: A weighted network analysis approach

Gene coexpression network topology of cardiac development, hypertrophy, and failure

Accelerated aging with HIV begins at the time of initial HIV infection

Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV

Random generalized linear model: a highly accurate and interpretable ensemble predictor

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