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Metagenomic Sequencing in the ICU for Precision Diagnosis of Critical Infectious Illnesses

Critical care (London, England), 2023-03, Vol.27 (1), p.90-90, Article 90

2023

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Prevalence of type-1 interferon autoantibodies in adults with non-COVID-19 acute respiratory failure

Respiratory research, 2022-12, Vol.23 (1), p.354-354

2022

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Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections

Genome medicine, 2022-07, Vol.14 (1), p.1-74, Article 74

2022

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Posttransfusion Sepsis Attributable to Bacterial Contamination in Platelet Collection Set Manufacturing Facility, United States

Emerging infectious diseases, 2023-10, Vol.29 (10), p.1979-1989

2023

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Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children

The Journal of clinical investigation, 2023-04, Vol.133 (7)

2023

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The antibiotic resistance reservoir of the lung microbiome expands with age in a population of critically ill patients

Nature communications, 2024-01, Vol.15 (1), p.92-92, Article 92

2024

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Plasma SARS-CoV-2 nucleocapsid antigen levels are associated with progression to severe disease in hospitalized COVID-19

Critical care (London, England), 2022-09, Vol.26 (1), p.1-278, Article 278

2022

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Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children

Nature communications, 2022-07, Vol.13 (1), p.3937-3937, Article 3937

2022

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Rapid Increase of SARS-CoV-2 Variant B.1.1.7 Detected in Sewage Samples from England between October 2020 and January 2021

mSystems, 2021-06, Vol.6 (3)

2021

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Emergence of Ceftazidime- and Avibactam-Resistant Klebsiella pneumoniae Carbapenemase-Producing Pseudomonas aeruginosa in China

mSystems, 2021-12, Vol.6 (6), p.e0078721-e0078721

2021

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Aerosolized nicotine from e-cigarettes alters gene expression, increases lung protein permeability, and impairs viral clearance in murine influenza infection

Frontiers in immunology, 2023-03, Vol.14, p.1076772-1076772

2023

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Host-Microbe Metagenomics: a Lens To Refocus Our Perspective on Infectious and Inflammatory Diseases

mSystems, 2021-08, Vol.6 (4), p.e0040421-e0040421

2021

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In host evolution of beta lactam resistance during active treatment for Pseudomonas aeruginosa bacteremia

Frontiers in cellular and infection microbiology, 2023-08, Vol.13, p.1241608-1241608

2023

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Respiratory Metagenomics: Ready for Prime Time?

American journal of respiratory and critical care medicine, 2024-01, Vol.209 (2), p.124

2024

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Clinical and biological heterogeneity of multisystem inflammatory syndrome in adults following SARS-CoV-2 infection: a case series

Frontiers in medicine, 2023-07, Vol.10, p.1187420

2023

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PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest

mSystems, 2022-04, Vol.7 (2), p.e0118021-e0118021

2022

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A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants

mSystems, 2023-02, Vol.8 (1), p.e0067122-e0067122

2023

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Direct RNA Sequencing Unfolds the Complex Transcriptome of Vibrio parahaemolyticus

mSystems, 2021-12, Vol.6 (6), p.e0099621

2021

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Proteomics and Transcriptomics Uncover Key Processes for Elasnin Tolerance in Methicillin-Resistant Staphylococcus aureus

mSystems, 2022-02, Vol.7 (1), p.e0139321-e0139321

2022

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The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE , Spread Unnoticed

mSystems, 2021-08, Vol.6 (4), p.e0051121-e0051121

2021

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Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

Science translational medicine, 2021-09, Vol.13 (612), p.eabh2624

2021

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Increased rates of secondary bacterial infections, including Enterococcus bacteremia, in patients hospitalized with coronavirus disease 2019 (COVID-19)

Infection control and hospital epidemiology, 2022-10, Vol.43 (10), p.1416-1423

2022

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Physical Activity Associates With Lower Systemic Inflammatory Gene Expression in Rheumatoid Arthritis

Journal of rheumatology, 2022-12, Vol.49 (12), p.1320

2022

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Molecular Phenotypes of Acute Respiratory Distress Syndrome in the ROSE Trial Have Differential Outcomes and Gene Expression Patterns That Differ at Baseline and Longitudinally over Time

American journal of respiratory and critical care medicine, 2024-04, Vol.209 (7), p.816

2024

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Metagenomic Sequencing in the ICU for Precision Diagnosis of Critical Infectious Illnesses

Prevalence of type-1 interferon autoantibodies in adults with non-COVID-19 acute respiratory failure

Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections

Posttransfusion Sepsis Attributable to Bacterial Contamination in Platelet Collection Set Manufacturing Facility, United States

Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children

The antibiotic resistance reservoir of the lung microbiome expands with age in a population of critically ill patients

Plasma SARS-CoV-2 nucleocapsid antigen levels are associated with progression to severe disease in hospitalized COVID-19

High-Frequency, High-Throughput Quantification of SARS-CoV-2 RNA in Wastewater Settled Solids at Eight Publicly Owned Treatment Works in Northern California Shows Strong Association with COVID-19 Incidence

Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children

Rapid Increase of SARS-CoV-2 Variant B.1.1.7 Detected in Sewage Samples from England between October 2020 and January 2021

Emergence of Ceftazidime- and Avibactam-Resistant Klebsiella pneumoniae Carbapenemase-Producing Pseudomonas aeruginosa in China

Aerosolized nicotine from e-cigarettes alters gene expression, increases lung protein permeability, and impairs viral clearance in murine influenza infection

Host-Microbe Metagenomics: a Lens To Refocus Our Perspective on Infectious and Inflammatory Diseases

In host evolution of beta lactam resistance during active treatment for Pseudomonas aeruginosa bacteremia

Respiratory Metagenomics: Ready for Prime Time?

Clinical and biological heterogeneity of multisystem inflammatory syndrome in adults following SARS-CoV-2 infection: a case series

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest

A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants

Direct RNA Sequencing Unfolds the Complex Transcriptome of Vibrio parahaemolyticus

Proteomics and Transcriptomics Uncover Key Processes for Elasnin Tolerance in Methicillin-Resistant Staphylococcus aureus

The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE , Spread Unnoticed

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

Increased rates of secondary bacterial infections, including Enterococcus bacteremia, in patients hospitalized with coronavirus disease 2019 (COVID-19)

Physical Activity Associates With Lower Systemic Inflammatory Gene Expression in Rheumatoid Arthritis

Molecular Phenotypes of Acute Respiratory Distress Syndrome in the ROSE Trial Have Differential Outcomes and Gene Expression Patterns That Differ at Baseline and Longitudinally over Time

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