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Network analyses reveal pervasive functional regulation between proteases in the human protease web

PLoS biology, 2014-05, Vol.12 (5), p.e1001869-e1001869

2014

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Modification of BRCA1-associated breast cancer risk by HMMR overexpression

Nature communications, 2022-04, Vol.13 (1), p.1895-16, Article 1895

2022

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Macrophage Matrix Metalloproteinase-12 Dampens Inflammation and Neutrophil Influx in Arthritis

Cell reports (Cambridge), 2014-10, Vol.9 (2), p.618-632

2014

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Pathogenic BRCA1 variants disrupt PLK1-regulation of mitotic spindle orientation

Nature communications, 2022-04, Vol.13 (1), p.2200-17, Article 2200

2022

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Robust unsupervised deconvolution of linear motifs characterizes 68 protein modifications at proteome scale

Scientific reports, 2021-11, Vol.11 (1), p.22490-22490, Article 22490

2021

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Targetable lesions and proteomes predict therapy sensitivity through disease evolution in pediatric acute lymphoblastic leukemia

Nature communications, 2023-11, Vol.14 (1), p.7161-7161, Article 7161

2023

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Adaptation of the Th-MYCN Mouse Model of Neuroblastoma for Evaluation of Disseminated Disease

International journal of molecular sciences, 2023-07, Vol.24 (15), p.12071

2023

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TAILS N-Terminomics and Proteomics Show Protein Degradation Dominates over Proteolytic Processing by Cathepsins in Pancreatic Tumors

Cell reports (Cambridge), 2016-08, Vol.16 (6), p.1762-1773

2016

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Detectability of Biotin Tags by LC–MS/MS

Journal of proteome research, 2021-05, Vol.20 (5), p.3002-3008

2021

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RNA Polymerase II transcription independent of TBP in murine embryonic stem cells

eLife, 2023-03, Vol.12

2023

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PDX models reflect the proteome landscape of pediatric acute lymphoblastic leukemia but divert in select pathways

Journal of experimental & clinical cancer research, 2021-03, Vol.40 (1), p.96-96, Article 96

2021

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Proteomic amino-termini profiling reveals targeting information for protein import into complex plastids

PloS one, 2013-09, Vol.8 (9), p.e74483-e74483

2013

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Fold-Change Compression: An Unexplored But Correctable Quantitative Bias Caused by Nonlinear Electrospray Ionization Responses in Untargeted Metabolomics

Analytical chemistry (Washington), 2020-05, Vol.92 (10), p.7011-7019

2020

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Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D290-D297

2015

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Novel Matrix Metalloproteinase Inhibitor [18F]Marimastat-Aryltrifluoroborate as a Probe for In vivo Positron Emission Tomography Imaging in Cancer

Cancer research (Chicago, Ill.), 2010-10, Vol.70 (19), p.7562-7569

2010

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Multi-omic profiling of the leukemic microenvironment shows bone marrow interstitial fluid is distinct from peripheral blood plasma

Experimental hematology & oncology, 2022-09, Vol.11 (1), p.1-56, Article 56

2022

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Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples

Molecular & cellular proteomics, 2019-11, Vol.18 (11), p.2335-2347

2019

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Annotating N Termini for the Human Proteome Project: N Termini and Nα-Acetylation Status Differentiate Stable Cleaved Protein Species from Degradation Remnants in the Human Erythrocyte Proteome

Journal of proteome research, 2014-04, Vol.13 (4), p.2028-2044

2014

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ASAPAutomated Sonication-Free Acid-Assisted Proteomesfrom Cells and FFPE Tissues

Analytical chemistry (Washington), 2023-02, Vol.95 (6), p.3291-3299

2023

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Sensitive Identification of Known and Unknown Protease Activities by Unsupervised Linear Motif Deconvolution

Analytical chemistry (Washington), 2022-02, Vol.94 (4), p.2244-2254

2022

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Protein TAILS: when termini tell tales of proteolysis and function

Current opinion in chemical biology, 2013-02, Vol.17 (1), p.73-82

2013

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Statistical Testing for Protein Equivalence Identifies Core Functional Modules Conserved across 360 Cancer Cell Lines and Presents a General Approach to Investigating Biological Systems

Journal of proteome research, 2024-06, Vol.23 (6), p.2169-2185

2024

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Isolation of Detergent Insoluble Proteins from Mouse Brain Tissue for Quantitative Analysis Using Data Independent Acquisition (DIA)

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2456, p.29

2022

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Positional proteomics: is the technology ready to study clinical cohorts?

Expert review of proteomics, 2023-12, Vol.20 (12), p.309-318

2023

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Network analyses reveal pervasive functional regulation between proteases in the human protease web

Modification of BRCA1-associated breast cancer risk by HMMR overexpression

Macrophage Matrix Metalloproteinase-12 Dampens Inflammation and Neutrophil Influx in Arthritis

Pathogenic BRCA1 variants disrupt PLK1-regulation of mitotic spindle orientation

Robust unsupervised deconvolution of linear motifs characterizes 68 protein modifications at proteome scale

Targetable lesions and proteomes predict therapy sensitivity through disease evolution in pediatric acute lymphoblastic leukemia

Adaptation of the Th-MYCN Mouse Model of Neuroblastoma for Evaluation of Disseminated Disease

TAILS N-Terminomics and Proteomics Show Protein Degradation Dominates over Proteolytic Processing by Cathepsins in Pancreatic Tumors

Detectability of Biotin Tags by LC–MS/MS

RNA Polymerase II transcription independent of TBP in murine embryonic stem cells

PDX models reflect the proteome landscape of pediatric acute lymphoblastic leukemia but divert in select pathways

HMMR acts in the PLK1-dependent spindle positioning pathway and supports neural development

Proteomic amino-termini profiling reveals targeting information for protein import into complex plastids

Fold-Change Compression: An Unexplored But Correctable Quantitative Bias Caused by Nonlinear Electrospray Ionization Responses in Untargeted Metabolomics

Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events

Novel Matrix Metalloproteinase Inhibitor [18F]Marimastat-Aryltrifluoroborate as a Probe for In vivo Positron Emission Tomography Imaging in Cancer

Multi-omic profiling of the leukemic microenvironment shows bone marrow interstitial fluid is distinct from peripheral blood plasma

Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples

Annotating N Termini for the Human Proteome Project: N Termini and Nα-Acetylation Status Differentiate Stable Cleaved Protein Species from Degradation Remnants in the Human Erythrocyte Proteome

ASAPAutomated Sonication-Free Acid-Assisted Proteomesfrom Cells and FFPE Tissues

Sensitive Identification of Known and Unknown Protease Activities by Unsupervised Linear Motif Deconvolution

Protein TAILS: when termini tell tales of proteolysis and function

Statistical Testing for Protein Equivalence Identifies Core Functional Modules Conserved across 360 Cancer Cell Lines and Presents a General Approach to Investigating Biological Systems

Isolation of Detergent Insoluble Proteins from Mouse Brain Tissue for Quantitative Analysis Using Data Independent Acquisition (DIA)

Positional proteomics: is the technology ready to study clinical cohorts?

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