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Mobile DNA III

Michael Chandler, Martin Gellert, Alan M. Lambowitz, Phoeba A. Rice, Suzanne B. Sandmeyer

3, 2015

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DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

Nature methods, 2017-01, Vol.14 (1), p.75-82

2017

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Group II introns: mobile ribozymes that invade DNA

Cold Spring Harbor perspectives in biology, 2011-08, Vol.3 (8), p.a003616-a003616

2011

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Broad role for YBX1 in defining the small noncoding RNA composition of exosomes

Proceedings of the National Academy of Sciences - PNAS, 2017-10, Vol.114 (43), p.E8987-E8995

2017

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Efficient and quantitative high-throughput tRNA sequencing

Nature methods, 2015-09, Vol.12 (9), p.835-837

2015

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Distinct mechanisms of microRNA sorting into cancer cell-derived extracellular vesicle subtypes

eLife, 2019-08, Vol.8

2019

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Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase–Cas1 fusion protein

Science (American Association for the Advancement of Science), 2016-02, Vol.351 (6276), p.932-932

2016

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Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools

Cold Spring Harbor perspectives in biology, 2019-04, Vol.11 (4), p.a032375

2019

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Group II intron-like reverse transcriptases function in double-strand break repair

Cell, 2022-09, Vol.185 (20), p.3671-3688.e23

2022

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Mobile Bacterial Group II Introns at the Crux of Eukaryotic Evolution

Microbiology spectrum, 2015-02, Vol.3 (1), p.MDNA3-0050-2014

2015

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Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications

Molecular cell, 2017-12, Vol.68 (5), p.926-939.e4

2017

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Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains

Science (American Association for the Advancement of Science), 2015-01, Vol.347 (6217), p.75-78

2015

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Improved TGIRT-seq methods for comprehensive transcriptome profiling with decreased adapter dimer formation and bias correction

Scientific reports, 2019-05, Vol.9 (1), p.7953-7953, Article 7953

2019

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Mobile Bacterial Group II Introns at the Crux of Eukaryotic Evolution

Microbiology spectrum, 2015-02, Vol.3 (1), p.MDNA3-0050-2014

2015

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Limitations of alignment-free tools in total RNA-seq quantification

BMC genomics, 2018-07, Vol.19 (1), p.510-510, Article 510

2018

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Template-switching mechanism of a group II intron-encoded reverse transcriptase and its implications for biological function and RNA-Seq

The Journal of biological chemistry, 2019-12, Vol.294 (51), p.19764-19784

2019

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RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase

RNA (Cambridge), 2016-04, Vol.22 (4), p.597-613

2016

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Mobile group II introns

Annual review of genetics, 2004-01, Vol.38 (1), p.1-35

2004

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Facile single-stranded DNA sequencing of human plasma DNA via thermostable group II intron reverse transcriptase template switching

Scientific reports, 2017-08, Vol.7 (1), p.8421-14, Article 8421

2017

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Simultaneous sequencing of coding and noncoding RNA reveals a human transcriptome dominated by a small number of highly expressed noncoding genes

RNA (Cambridge), 2018-07, Vol.24 (7), p.950-965

2018

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High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases

RNA (Cambridge), 2016-01, Vol.22 (1), p.111-128

2016

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Broad and adaptable RNA structure recognition by the human interferon-induced tetratricopeptide repeat protein IFIT5

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (33), p.12025-12030

2014

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A targetron system for gene targeting in thermophiles and its application in Clostridium thermocellum

PloS one, 2013-07, Vol.8 (7), p.e69032

2013

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Toward a molecular understanding of RNA remodeling by DEAD-box proteins

RNA biology, 2013-01, Vol.10 (1), p.44-55

2013

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Structural basis for template switching by a group II intron–encoded non-LTR-retroelement reverse transcriptase

The Journal of biological chemistry, 2021-08, Vol.297 (2), p.100971-100971, Article 100971

2021

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Mobile DNA III

DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

Group II introns: mobile ribozymes that invade DNA

Broad role for YBX1 in defining the small noncoding RNA composition of exosomes

Efficient and quantitative high-throughput tRNA sequencing

Distinct mechanisms of microRNA sorting into cancer cell-derived extracellular vesicle subtypes

Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase–Cas1 fusion protein

Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools

Group II intron-like reverse transcriptases function in double-strand break repair

Mobile Bacterial Group II Introns at the Crux of Eukaryotic Evolution

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications

Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains

Improved TGIRT-seq methods for comprehensive transcriptome profiling with decreased adapter dimer formation and bias correction

Mobile Bacterial Group II Introns at the Crux of Eukaryotic Evolution

Limitations of alignment-free tools in total RNA-seq quantification

Template-switching mechanism of a group II intron-encoded reverse transcriptase and its implications for biological function and RNA-Seq

RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase

Mobile group II introns

Facile single-stranded DNA sequencing of human plasma DNA via thermostable group II intron reverse transcriptase template switching

Simultaneous sequencing of coding and noncoding RNA reveals a human transcriptome dominated by a small number of highly expressed noncoding genes

High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases

Broad and adaptable RNA structure recognition by the human interferon-induced tetratricopeptide repeat protein IFIT5

A targetron system for gene targeting in thermophiles and its application in Clostridium thermocellum

Toward a molecular understanding of RNA remodeling by DEAD-box proteins

Structural basis for template switching by a group II intron–encoded non-LTR-retroelement reverse transcriptase

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